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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGgtagtttgatcctctttgatatttttaggggatgttaagatcatctcttacctttttaaccatctcttactgttttcttttttctgttgatccaag

Basic information

species Glycine max
transcript GLYMA14G07060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 5'ss of exon 5
AGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACAGAGCGTGAGgtagtttgatcctctttgatattt-----ttaggggatgttaagatcatctcttaccttt---ttaaccatctcttactgttttcttttttctgttgatccaag
 || |||  || |||||||| ||| || |||||||  |||| |||||| ||| | || |||||||||| ||||||||||||||| ||||| |||| ||||||| |||| || |||| ||| |||     ||     |  |  |  | || |||    | |   ||||   |   ||  ||  ||  ||||||  || || |   
GGATATAGGGTTTGGAAATTATTTAGGATGCATGGGAACTTTTTTTCATCCAGAGTGCTTTCGCTGTCGCTCTTGTGGTTACCCAATTACTGAGCATGAGgta-tttgttcttcttggatttttgaatatttaattacctataatttatttctcttttctaaattaattttggatttatgcctttctttttcctttaattc---