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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag

Basic information

species Glycine max
transcript GLYMA14G06600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttga-agtcgtttgattttgatcataa-tattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag
 |||||||| |||||||||||  |||||||||| ||||| ||||| |||||||||||||| || |||||  |||||||||||||| | | ||| |||||||||  |         |      |  ||| |  || |         ||  | | | || |  ||  | | |||  |  ||  | || |||  |         ||   |||  ||||  |    | |   ||   | |    |||| |||
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctc--------aacggaaagccattgac----tttggatggtttttactgttttacag

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S211_67V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatg--ccaagtacaatggtctttatttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag
 || || || |  |||||| |  | ||||| ||| | |||||    |||| | | |||||||||||||||||||| ||||| ||  |||| ||||||||||| |  ||     |   | ||||||| |  |||    ||   || | ||  | |     | || ||  ||    ||  |  | | |||        ||| ||       |||  | | | || |  |                     
GCCATCGTTCCGAAACTACCGGCTCTGGTCGTTCTTCGGCCTCATTATGATCTCCTACACAGCTTGGTACATGACAATTGCTGCACTTGCCCATGGCCAGgtgacgaactgttcctcttcaatggtataaatt---gcaactggttttcagtcac--agaatccttccat--caattttgctctcatactcc----taacaaggttctgaac--tgtgatggagctag--------------------

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S90_46V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaa----acattatcacggtgtcactgagctgtttaa-ttttgcag------
||| || || |  |||||| || | ||||||||| | |||||    |||| | | |||||||||||||||||||| ||||| ||  |||| |||||||||||||   |       | ||| |   |  ||| || | |  |  | |   |||   |||| ||  | ||||  ||   |   |||||  |     | ||   ||  ||      | ||   ||  |   |  ||| |  |  | ||||   |      
ACCATCGTTCCGAAACTACCGACTGTGGTCTTTCTTCGGCCTCATTATGATCTCCTACACAGCTTGGTACATGACTATTGCTGCTCTTGCCCATGGCCAGgtaatggac------ttcaacgacgtgaattgctacgg--gttttttatttacaggaagacgagtcatttctatt-catctttatatatagccatcaatctaatcaatttctgctttccaacactcctaacgaggttctggacttttatggagccag

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ21839 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag
 || || |||||||||||  || | ||||| ||||| ||| | || |||||||||||||| || |||||||||||||| || || || |  || |||||||||   ||    ||| |||| |     | |  |          | | |||| | |       | |     |  || |  | |  |  ||      || |   |                                           
CCCGTCTTTTCACAACTATCGAGTGTGGTCCTTCCTCGGCTTGGGGATGACCACTTACACGGCCTGGTACATGACCATCGCTGCGATCGTCCACGGCCAGgtagagaa---gaagaacaaagaaaaatctcccaaattcccactttgtcttgtcttcctctctctcgcgctattcgttctctcctttctccccacaacacgga-------------------------------------------

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgcc--------aagtacaatggtcttta---tttcttcagtggggtctctcttat--ttgaagtcgtttgattttgatcata----atattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag
 || || || |||||||| ||||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||| ||  | ||  | |  |||||| |||| ||  | ||         |  | || |||    ||   ||   ||      || |    ||    |  | |  | |    || |||||     | ||| |||  |  | || | |          |  ||||     || |  |  | || | ||||||||
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGAATGACAACTTACACGGCTTGGTACATGACAATCACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttct-tacataggcgtggtctaacatcaataattctcacacttcttcacttttgcag

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaa-gtacaatggtcttt-atttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag
 || || |||||||||||  || | ||||| ||||| ||| | || |||||||||||||| || |||||||||||||| || || || |  || |||||||||   ||    ||   | ||   |||   |  |   || |  |   | ||||  |     ||    | | ||  |  |    ||    |  |    |                                                  
CCCGTCTTTTCACAACTATCGAGTGTGGTCCTTCCTCGGCTTGGGGATGACCACTTACACGGCCTGGTACATGACCATCGCTGCGATCGTCCACGGCCAGgtagagaagaagaacaaagaaaaatctcccaaattcccactttgtcttgtcttcctctctctctcgcgctattcgttctctcctttctccccacaacacg------------------------------------------------

upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ18760 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgcc--------aagtacaatggtc------tttatttcttcagtggggtctctcttatttgaa--gtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag-------------------------------
 || || || |||||||| ||||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||| ||| | ||  | |  |||||| |||| ||  | ||         |  | || |||         || | || |||  |    || |   | | |||   || ||   |||   |       ||   || |  ||  |  | | |  | | ||| | |   | |     ||  ||    | |  ||                                
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGGATGACAACTTACACGGCTTGGTACATGACAATTACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcattttcttttgctgctttgctacatcatgagatgatagaggatagattttaaacttcttgtataggcgt--ggtctaacatgaataattctcacacttcttcacttttgcag