Sequence
atgc intronic sequence ATGC exonic sequenceGTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaaggatcatatcttttgacttgcatagtttaaaccaatctaaccttgatcatctgaactctcttattcaattttaagatattccacttgattatggcaagagtttggtttccttcctttttcaccctatttggttgtaaatatgaatttaacatgacttcatattaacattgattcag
Basic information
species | Glycine max |
transcript | GLYMA14G03520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G03520.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 5
GTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaaggatcatatcttttgacttgcatagtttaaaccaatctaaccttgatcatctgaactctcttattcaattttaagatattccacttgattatggcaagagtttggtttccttcctttttcaccctatttggtt-gtaaatatgaatttaaca-tgacttcatatta-acattgattcag--
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GTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACgtatgtgtt-cagcatttgtct------atatatactattataaattaagttaattg--ctaatgaattaggtttagttaaatttagtttggtttcaataagctcatgcgataattttggcagcatgttagacagttaggtagtgcctggttagcaatatcttattgttgtatattgttttgcag
upper sequence: GLYMA14G03520.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G825226_T03 (Zea mays), 5'ss of exon 5
GTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaag-gatcatatcttttgacttgcatagtttaaacca-atctaaccttgatcatctgaactctcttattca-attttaagatattccacttgattatggcaagagtttggtttccttcctttttcaccctatttggttgtaaatatgaatttaacatgacttcatattaacattgattcag
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GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTATCCTTCTCTTGGTGGAATGGAGTATgtaagtgaatatatcagatcactaacatattttctttcatatatttccttgctcccagtttctacctcttttatatataaatacatgctgatttaacatg-----------------------------------------------------------------------------------
upper sequence: GLYMA14G03520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 4
GTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaaggatcatatcttttgacttgcatagtttaaaccaatcta-accttgatcatctgaactctcttattcaattt--taagatattccacttgattatggcaagagtttggtttccttcctttttcaccctatttggttgtaaatatgaatttaacatgacttcatattaacattgattcag
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GTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTATgtaagtaccctcttttgagtgttttccccccttttccattctgtgatttaaagaaaaaaagcctaatgtacatttccataagatggtggatgtgtgtgtg-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|308098376|gb|HO760117.1|HO760117EST: ACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTAT GTGATTCATCATTTGCTTTCTTTAGTAGCAGTAGCATTTTCAATGCTGAGC
genomic: ACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaaggatca ... attgattcagGTGATTCATCATTTGCTTTCTTTAGTAGCAGTAGCATTTTCAATGCTGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATgtaaggatcatatcttttgacttgcatagtttaaaccaatctaaccttgatcatctgaactctcttattcaattttaagatattccacttgattatggcaagagtttggtttccttcctttttcaccctatttggttgtaaatatgaatttaacatgacttcatattaacattgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA