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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgtacacttaggaactcacttttgttttggatttcag

Basic information

species Glycine max
transcript GLYMA14G03290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g47470.1 (Oryza sativa), 5'ss of exon 5
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatact-taaaggatttgtacacttaggaa----ctcacttttgttttggatttcag----------
||||||||||||| ||    ||||||||||||||||| |||||||||||  || |||| |     ||  |||| |  || ||||| |||||||| | ||||||||       ||| ||  | |  |  || || |||  | |      | |||| | || | ||    | ||  ||  ||||    || |           
TTGATGATGAATTTAACAGCAAGGTTTCTGATTTTGGGTTGGCCAAACTACTGAATTCTGATAGTAGCTACATCAATACAAGAGTGATGGGAACATATGGgtata----gcttttttttgcaccatgtttgttctattttatttgtcttctgtaaatttggaaaaaagcacatcttaattttcttcttaatctgttgttag

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G017386_T03 (Zea mays), 5'ss of exon 5
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgta----cacttaggaactcacttttgttttggatttcag---------
||||||||||||| ||||  || || ||||| ||||| ||||| ||||||||||  |||| | |||| ||||| || |||||||| |||||||| |||||||||  |     |||  || | | | |||  |  | | |||   |  |||  |    |   |||    | |||||  |  |  ||||            
TTGATGATGAATTTAATGGCAAAGTATCTGACTTTGGATTGGCTAAACTTTTGGGATCAGACAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGgtat-tattcttttttctaacccatacctgctcatttgctttgtgtctttacaatgacttatagagtttaactttcctcatccatttttcttgcttcag

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 5
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttatttta------tacttaaaggatttgtacacttaggaactcacttttg--ttttggatttcag------------------------------------------------------------------------------------------------
||||||| ||||||||||  ||| ||||||||||||| |||||||| || |||| | ||||  | ||||| || || ||| |||| |||||||| || ||||||   |     ||  ||| |||||| || || ||      | ||| |   | | | |||  | | |   || |       |||  || |                                                                                                   
TTGATGAAGAATTCAATGGCAAGCTTTCTGATTTTGGATTGGCCAAGCTCTTGGGTGCAGGGAAGAGTCATATCACAACTCGAGTTATGGGAACTTTCGGgtatgttgtttgcttgatat-tctttcatttttgtagtaccttgcttgactaactggaacatgtggtattacagtaggaacctttacatgttgagggatttgtttttcatgtttttagagcagtataaagttttgtggtgcttcacatgacatgaaaagaaccattcaccttttgttgctactgtttcag

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G031400_T01 (Zea mays), 5'ss of exon 5
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttatta---tctctttccttatttta----tacttaaaggatttgta--cacttaggaactcact---tttgttttggatttcag--
| || |||||||||||    ||||||||||||||||| ||||| |||||| || |||| | | ||||||| || |  || ||||| |||||||| | ||||||||       ||||| |   || |||||||  | |||    || ||     | ||| |  |  || |||| || |     |  ||||     |||   
TCGACGATGAATTCAACAGCAAGGTTTCTGATTTTGGGTTGGCTAAACTTCTGAATTCTGACAAAAGTCATATCAATACAAGAGTTATGGGAACATATGGgtatagctctgttttatgacgttccctttcctattgttagggctagtttggaaacttgaatcccttttggaattcccgcggctatttttccccctcaatc

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgtacacttaggaactcacttttgttttggatttcag
|||| ||||| |||||||||||| ||||||||||||| |||||||| || || || || || || |||||||| || || ||||| |||||||| ||||||||     ||||||| |   ||||||  | ||  |    ||   | ||   ||   |||     |||  | | | |      ||||
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaatttgtaccctctttggtgatgatgggttttt-gtatacatattattaacgg-tcatgtgtatat---gcatcag

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgtacacttaggaactcacttttgttttgga-tttcag----------------------------
|||||||||| |||||||||||||||||||||||||| |||||||| || ||||  ||||| ||||| |||||||| ||||||||||||||||| |||||||||    | |  |  | ||||     |   |||  |  ||| ||  |||  ||   || ||  | | |||| | |  ||   ||||                            
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttata--tgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag