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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTGATGCTGTGGTGGCTGCATATCTTTTGAATGCTACCCTTGTTGTTCCAGAGTTGGATCATACTTCTTTCTGGAAAGACACCAGgtctgtctttgccttgtaaatcatgtatgatacttttattggaagcaatattcagggtctcttaatttgtgtgctatttttttgcag

Basic information

species Glycine max
transcript GLYMA14G00520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00520.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
ATAGTTGATGCTGTGGTGGCTGCATATCTTTTGAATGCTACCCTTGTTGTTCCAGAGTTGGATCATACTTCTTTCTGGAAAGACACCAGgtctgtctttgc------cttgtaaatcatgtatgatacttttattggaagcaatattcagggtctcttaatttgtgtgctatttttttgcag--------------
|||||||||||||| || ||||||    |||| ||||| || ||||||||||| || |||||||| |  ||||||||||||||  | |||| |              | |  ||||  |   | ||  |  | |  |    | |    |   |   | || |  |   ||  |||| || |               
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttgaactgattaacttcttttctgaatgctctctgctgcag

upper sequence: GLYMA14G00520.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G168614_T02 (Zea mays), 5'ss of exon 5
ATAGTTGATGCTGTGGTGGCTGCATATCTTTTGAATGCTACCCTTGTTGTTCCAGAGTTGGATCATACTTCTTTCTGGAAAGACACCAGgtctgtctttgccttgtaaatcatgtatgatacttttattggaagc-------aatattcagggtctcttaatttgtgtgctatttttttgcag-------
|||||||||||||| || ||||||  | | ||||||||||| |||||||||||  |  ||||||| || ||||||||||||||  | |||| ||   | | |    |         |   | ||  || |  |          || |  |||   || || ||  | | || || | ||  |        
ATAGTTGATGCTGTAGTTGCTGCACGTATATTGAATGCTACACTTGTTGTTCCCAAACTGGATCAAACATCTTTCTGGAAAGATTCAAGgtatgcgatagtcac-cagtcagcacttcccaattcaatcgataatcttttatcatttataggtgttcatatttaatttactcttgtattcaatgctttag