Sequence
atgc intronic sequence ATGC exonic sequenceATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGCgtaagtactatatgtatgtacgtatgtgacagtaataatacattgtcctatgtatgcttcattccagaatcaaatcaattaaaaagaggctggcaagaaa...
Basic information
species | Glycine max |
transcript | GLYMA13G44740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G16880.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGCgtaagtactatatgtatgtacgtatgtgacagtaataatacattgtcctatgtatgcttcattcca----gaatcaaatcaat-taaaaagaggctggcaagaaa-------------------------------------
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ATGAATGCGCTCAAAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACAACAAATTTGCCATTACTAGAGCgtatgt-cttttcatatcatcaaagagtattttgagctccaagagtcgtttagatagttaatgttgctttgaatcgattgactctgtcaaatagttgactttagattgagttttgagctgactgtaattgttgttacaacag
upper sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 4
ATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGCgtaagtactatatgta---tgtacgtatgtgacagtaataatacattgtcctatgtatgcttcattccagaatcaaatcaattaaaaagaggctggcaagaaa
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ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgtggagtagaatttagatgcatttttgcttcaattcccatatctatcaattcttt-tctttcattccaccttgttactgatat-ctcccaattt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5509224|gb|AI855782.1|AI855782EST: GTATTTCTGGATTCTTCTGGCAAACACAACAAGGTTTCCATCACAAAAGC TGATTCCGGAAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTT
genomic: GTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCCGGAAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGCgtaagtactatatgtatgtacgtatgtgacagtaataatacattgtcctatgtatgcttcattccagaatcaaatcaattaaaaagaggctggcaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaga