1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcatttttactggttttattactcttgcttcataagagagtactctatttctcttacagtgagcacaatttttcaaaattcacatttgtggtgg...
species | Glycine max |
transcript | GLYMA13G44000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAACATTTTGGAGGATCCCGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGEST: gi|17154054|gb|BM143987.1|BM143987
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|151403951|gb|EV273761.1|EV273761
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|298182900|gb|HO028113.1|HO028113
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGEST: gi|17153892|gb|BM143825.1|BM143825
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|192323236|gb|FK017402.1|FK017402
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|192329314|gb|FK020233.1|FK020233
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|208136320|gb|GD933246.1|GD933246
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AAAGCTTTCAG TAACTTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGEST: gi|151397263|gb|EV267136.1|EV267136
genomic: AAAGCTTTCAGgtatgttcat ... ttctctgcagTAAC-TGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|13562443|gb|BG550663.1|BG550663
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAAAGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAEST: gi|31464055|gb|CD406083.1|CD406083
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAA
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|151410513|gb|EV280328.1|EV280328
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|9203815|gb|BE330039.1|BE330039
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTGTATCGGTGGEST: gi|58019023|gb|CX705765.1|CX705765
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACA-TTTGGAAGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|192306124|gb|FG996570.1|FG996570
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|298190798|gb|HO032919.1|HO032919
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGGACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|193689192|gb|FK631403.1|FK631403
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|14012002|gb|BG726924.1|BG726924
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|208240966|gb|GE037780.1|GE037780
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: GGATCCTGAACTGAAAAATGCTGTAAAAGCTCTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|10232984|gb|BE801872.1|BE801872
genomic: GGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|22541152|gb|BU090995.1|BU090995
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AAACATTTTGGAGGATCCTGAACTGAATAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|192306123|gb|FG996569.1|FG996569
genomic: AAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|18039188|gb|BM307482.1|BM307482
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|17021277|gb|BM092311.1|BM092311
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcatttttactggttttattactcttgcttcataagagagtactctatttctcttacagtgagcacaatttttcaaaattcacatttgtggtgg
- - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG