1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatcttatcagtatcaattttatgcactattattttattttattcaatactattatattatatattgtacctcaccacttgatgtgaggaccaat...
species | Glycine max |
transcript | GLYMA13G43050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|208234357|gb|GE034506.1|GE034506
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|208329805|gb|GE128838.1|GE128838
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTTGTATCAACAGTGAAAGAAGGCTACGAGTGTTGAAGAGTTCTGAEST: gi|22928435|gb|BU545574.1|BU545574
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTT-GTATCAACAGTGAA-GA-GGCTACGAGTGTTGAAGAGTTCTGA
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|193355500|gb|FK322157.1|FK322157
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|192297031|gb|FG990317.1|FG990317
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|302141315|gb|HO212191.1|HO212191
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|208103627|gb|GD904038.1|GD904038
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|193677010|gb|FK618762.1|FK618762
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|207787661|gb|GD762033.1|GD762033
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAAGCEST: gi|193571278|gb|FK532257.1|FK532257
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGA-GC
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|192308530|gb|FK002426.1|FK002426
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|7692407|gb|AW760514.1|AW760514
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGACGATAATGAACGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCATCAGTGAAGACGCTACTAGTGEST: gi|5058123|gb|AI736599.1|AI736599
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTG
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|207818234|gb|GD792323.1|GD792323
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTEST: gi|193510942|gb|FK468882.1|FK468882
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTT
EST: CTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|193464135|gb|FK427919.1|FK427919
genomic: CTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTEST: gi|208170090|gb|GD966525.1|GD966525
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGNGCTEST: gi|13312662|gb|BG406313.1|BG406313
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCA CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAAGTTCTGAGCEST: gi|193387770|gb|FK350975.1|FK350975
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGA-GTTCTGAGC
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGG-ATGTGCCATGGCA CATGTTTGTATCAACAG
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatcttatcagtatcaattttatgcactattattttattttattcaatactattatattatatattgtacctcaccacttgatgtgaggaccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG