Sequence
atgc intronic sequence ATGC exonic sequenceGAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgtatgcatctgttattagttacagtttgttatttgcattgcgtaaaagttttgatctattttctaaatatttcctcccttgaag
Basic information
species | Glycine max |
transcript | GLYMA13G42470.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G42470.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
----------------------GAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgta--tgcatctgttattagttacagtttgtta----tttgcattgcgtaaaagttttgatctattttctaaatatttcctc--ccttgaag--------
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TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga
upper sequence: GLYMA13G42470.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G431350_T01 (Zea mays), 5'ss of exon 4
GAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgta--tgcatctgttattagttacagtttgtta----tttgcattgcgtaaaagttttgatctattttctaaatatttcctc--ccttgaag--------
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AAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga
upper sequence: GLYMA13G42470.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g01710.t01 (Vitis vinifera), 5'ss of exon 4
GAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgtatgca-tctgttattagttacagtttgttatttgcattgcgtaaaagtt------ttgatctattttctaaat-----atttcctcccttgaag----
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GAACAACATTGACAAGAGGGAGGCACTTGAGAACTTGGATCTCATTCTCCTATGCCTTGATGAGATTGTTGATGGAGGgtatgcaatatgcttctcatgttctctcgtcctttaaaatatttcaaaatgcccttgtttacacatgaacttaatttaggatcttctcatagcaagtgcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12688052|gb|BG154388.1|BG154388EST: GAAAACTTGCACCTCATTCTATTATGCCTTGATGAGATTGATGATGGAGG GATCATACTCGAAACA
genomic: GAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgtatgcatct ... tcccttgaagGATGATACTTGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgtatgcatctgttattagttacagtttgttatttgcattgcgtaaaagttttgatctattttctaaatatttcctcccttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG