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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatgaacttgttcttacaaataaataactgctacctctgtattgttgcttttgcaaagtgacattggagctgctatgtataataatatctacataaatataaatttttgatagatgtaatcacatgcttgaaaatag

Basic information

species Glycine max
transcript GLYMA13G41580.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41580.5 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 4
TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatgaacttgttcttacaaataaataactgctacctctgtattgttgcttttgcaaagtgacattggagctgctatgtataataatatctacataaatataaatttttgatagatgtaatcacatgcttgaaaatag
|| ||||| || ||  | |||||||||||||| |   ||||||||||||||||||||||| | |||| ||| ||||||||    |  ||||||   ||||   | ||||  ||| ||||       |  ||   |||  |||| | || | |  ||||||||   | || |  |||||     | |  ||  || |  ||  |   |   ||  |   ||||| || || ||
TTCTTTGCGGGTGTCGTTTTCTTTGCTGTTGTGGTTGGTTTTATCCCAGAGCCAACACTTGCTCCCAGTTCAGATGTGAAAAATAAGAAGgttcggatga-tctattctcccaa-taaagggacattcactaattatgcttgcatatgtatatcgacattggg--tact-tccataatttgggccaagtatctaaaggttagttggaatggtgcttg-atgctggagaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323380|gb|FK017081.1|FK017081
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
EST: gi|298174471|gb|HO014616.1|HO014616
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCGA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
EST: gi|192300198|gb|FG989320.1|FG989320
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
EST: gi|213617692|gb|DB967222.1|DB967222
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
EST: gi|298198295|gb|HO039834.1|HO039834
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAGGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
EST: gi|298167335|gb|HO010774.1|HO010774
EST:     TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA
genomic: TTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAGgttttaatga ... ttgaaaatagAAAAATGGGGATGAAGGAGGCAAGGATATTATGAAAAAGCATCGCCGGCAA