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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggtcaagttccttttctacctctttcactgtttggactcaatggattcttcagtgttctcactggcttagtgttttgtttctttggtggtacag

Basic information

species Glycine max
transcript GLYMA13G38420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38420.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 3
GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggtcaagttccttttctacctctttcactgtttggactcaatggattcttcagtgttctcactggcttagtgttttgtttctttggtggtacag
| || || |||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| |  |   ||      |||| |   ||||  || ||   ||||      || ||   |  ||                                    
GCGTGTGCAACCATGCGTTTCACTTCCACTGCATCAGCCGCTGGCTAAAGACTCGCCAAGTCTGCCCTCTCGgtaagacgaagaaacaaactttc-agagctttgcctctt---actcgtccagtttttt--tcctccag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610718|gb|DB961193.1|DB961193
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|208079288|gb|GD877072.1|GD877072
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|192330257|gb|FK020557.1|FK020557
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|151404234|gb|EV274044.1|EV274044
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|208245913|gb|GE044785.1|GE044785
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|151411010|gb|EV280821.1|EV280821
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|209715859|gb|BW674418.1|BW674418
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|21594409|gb|BQ610149.1|BQ610149
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|57574392|gb|CX547367.1|CX547367
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|18038971|gb|BM307265.1|BM307265
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|209715858|gb|BW674417.1|BW674417
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|7589690|gb|AW705459.1|AW705459
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|163921009|gb|EH039455.1|EH039455
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|57574160|gb|CX547135.1|CX547135
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|21677079|gb|BQ629430.1|BQ629430
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|213587487|gb|DB979107.1|DB979107
EST:     TTCCGATA-CATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: TTCC-ATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtgggt ... ggtggtacagATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAGAACTTTGATGCGG