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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACATCCACCATACTCGCCATCGCCGCCTGCATGGCCACCACGAACCGCTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGgttaactcttttgactttgaaaattctcccttattctctttcttctagtattcaacacattcaattattgactaaaaaatacgatagttacaaaactctt...

Basic information

species Glycine max
transcript GLYMA13G37010.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105783|gb|BI893523.1|BI893523
EST:     CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTG                         GCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA
genomic: CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGgttaactctt ... tttggtacagGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA
EST: gi|20448946|gb|BQ253070.1|BQ253070
EST:     CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTG                         GCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA
genomic: CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGgttaactctt ... tttggtacagGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA
EST: gi|22933590|gb|BU550729.1|BU550729
EST:     CCGGACCCTCTATATTGGCACCAACATCAACTG                         GCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAANCTCTGACA
genomic: CCGGACCCTCTATATTGGCACCAACATCAACTGgttaactctt ... tttggtacagGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA
EST: gi|22525592|gb|BU084403.1|BU084403
EST:     CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTG                         GCTCCAAACGCGCCAACCACAGGAATACTGTGTTTTCCACAACCTCTGACA
genomic: CTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGgttaactctt ... tttggtacagGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAACATCCACCATACTCGCCATCGCCGCCTGCATGGCCACCACGAACCGCTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGgttaactcttttgactttgaaaattctcccttattctctttcttctagtattcaacacattcaattattgactaaaaaatacgatagttacaaaactctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaata