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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggcttttattcctatcctggattatgattgttgattagtattgtgtttaatatgggtgattttattttcctatttccag

Basic information

species Glycine max
transcript GLYMA13G36690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36690.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 5'ss of exon 4
CTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgt----ttgtggcttttattccta-----tcctggattatgattgttgattagtattgtgtttaa-tatgggtgattttattttcctatttccag
 | |||||| | | || ||  | || || ||||| || ||  |||| || || || || |||||||| |||||||||||||| ||||||||||||||  |||    || ||  ||    |  |         |||    || || |   || |    ||   ||| |    |||   ||   | | |  |   ||
ATACAGCAGTGACAGACTTGGCGCCAACTCATCCGATTCGGCTGGGACTGGCCTTGAACTTCTCTGTCTTCTATTATGAGATTTTGAACTCCCCTGAGCGgtaagattttgagttgaggttttggatgcctgtgggacgtgcttttcttttggcggggttcgtaactgactgtgcgattgactgcgtggtggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407354|gb|EV277169.1|EV277169
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193621952|gb|FK567326.1|FK567326
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193677069|gb|FK619227.1|FK619227
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|213605462|gb|DB966955.1|DB966955
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGC
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGC
EST: gi|208231058|gb|GE034339.1|GE034339
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGGAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|58017492|gb|CX704234.1|CX704234
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|151411607|gb|EV281418.1|EV281418
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCTTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193425370|gb|FK387845.1|FK387845
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAA
EST: gi|151403064|gb|EV272874.1|EV272874
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|209725077|gb|BW659785.1|BW659785
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|254316527|gb|GR828064.1|GR828064
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|209725078|gb|BW659786.1|BW659786
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|298187900|gb|HO031857.1|HO031857
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|17963820|gb|BM270564.1|BM270564
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|6482317|gb|AW201586.1|AW201586
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|213602820|gb|DB978151.1|DB978151
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTTCGAAGCAAGCTTTTGATGAAGCTATTTCCGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193430900|gb|FK393706.1|FK393706
EST:     CTTTAAATTTCTCTGTTTTCTATTATTGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: CTTTAAATTTCTCTGTTTTCTATTA-TGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|209729014|gb|BW651766.1|BW651766
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|209712343|gb|BW671193.1|BW671193
EST:     AGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: AGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|16997097|gb|BM086469.1|BM086469
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|209709689|gb|BW668225.1|BW668225
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCT
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCT
EST: gi|208262337|gb|GE060580.1|GE060580
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193694954|gb|FK634340.1|FK634340
EST:     TTTAAATTTCTCTG-TTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAAGCTTG
genomic: TTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTG-AGCTTG
EST: gi|7146400|gb|AW508322.1|AW508322
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|207753749|gb|GD724229.1|GD724229
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|24205692|gb|BU964945.1|BU964945
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|9258319|gb|BE346466.1|BE346466
EST:     CTGTAAATTTCTTTGGTTTCTATTATGAGATCTTGGACTTCCCTTGAA-G                         AGCCTGTCATCTTGCGAAGCAGGCTTTTGATGAAGCTATTTCT
genomic: CTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCT-GAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCT
EST: gi|10848239|gb|BF071695.1|BF071695
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|58022604|gb|CX709345.1|CX709345
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193732844|gb|FK668173.1|FK668173
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|193313360|gb|FK282017.1|FK282017
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAG
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAG
EST: gi|151403934|gb|EV273744.1|EV273744
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|6666341|gb|AW277800.1|AW277800
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATNTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|31474413|gb|CD416441.1|CD416441
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|254316526|gb|GR828063.1|GR828063
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|151398789|gb|EV268660.1|EV268660
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|192304318|gb|FG993574.1|FG993574
EST:     GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG                         AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggcttttattcctatcctggattatgattgttgattagtattgtgtttaatatgggtgattttattttcctatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC