Sequence
atgc intronic sequence ATGC exonic sequenceATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTAgtaagttattaatttgctatttttcctcaaggagttgcatttatttattataaacctattgtccatttgttctgtag
Basic information
species | Glycine max |
transcript | GLYMA13G36570.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 5
ATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTAgtaagt----tattaatttgctatttttcctcaaggagtt--gcatttatttatta--taaacctattgtccatttgttctgtag--
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CTTTTTAGAGGCCTAGCTTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTGAAGCCACAAAACGTTTTGgtatgtgtcatgtggacaaggatttgttcttcctttgatttggtaattagttctgaattggtctcgtcgtctctctttgatgtacag
upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 5
ATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTAgtaagttattaatttgctatttttcctcaaggagt--tgcatttatttattataaacctattg-tccatttgttctgtag-----------------------
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ATTTTTAGGGGGCTGGCCTATATTCATACAGTGCCTGGGGTTTGCCATAGGGATGTGAAGCCTCAAAATGTTCTGgtatattgttcattttttgataaagattatggcatgctgaatcccctccccttcccccctttcctttaaatgacttggactgtttctttgaacataattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17402010|gb|BM178792.1|BM178792EST: ACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA GTTGATCCACTCACACACCAAGTCAAGCTCTGTGATTTTGGGAGTGCAAAA
genomic: ACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTAgtaagttatt ... tgttctgtagGTTGATCCACTCACACACCAAGTCAAGCTCTGTGATTTTGGGAGTGCAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTAgtaagttattaatttgctatttttcctcaaggagttgcatttatttattataaacctattgtccatttgttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC