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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCAGACCTGGTCGCCAGACAGGATTTGATTTTGATGAGGCGGATCTCTTAGAGTTGGATCAGTACCATGATGTCATTGTTGCATCTGCCATATTTGgtatggctcatgactaatgtattataagaatgccttttgttgtttgttttctgcttcacatagctccctttcatctataccag

Basic information

species Glycine max
transcript GLYMA13G35210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g02710.t01 (Vitis vinifera), 5'ss of exon 4
GGAAGCAGACCTGGTCGCCAGACAGGATTTGATTTTGATGAGGCGGATCTCTTAGAGTTGGATCAGTACCATGATGTCATTGTTGCATCTGCCATATTTGgtatggctcatga--ctaatgta--ttataagaatgccttttgttgtttgttttctgcttcacatagctccctttcatctatac-cag
||||| |  |||||||  || || ||||||||| ||||||| || || ||   ||||||||| |||   ||||| ||||||||||||||||| ||||||||||| |   ||||  ||  |  |  ||||  ||| |  ||||||| | ||  |     |  || |   | | | |||| | | | |||
GGAAGTAAGCCTGGTCATCATACTGGATTTGATATTGATGAAGCTGACCTTAAAGAGTTGGAGCAGCCTCATGAAGTCATTGTTGCATCTGCTATATTTGgtatcgaggatgaaactgctcaaatttatttgaaaggtttttgttttctgcataaaaata-acttttttgcatatcattttttctcag