1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttatatttttactctcaacttttgcttcagatgtttttttttaaattatatttttgcaaattgcggattccagaaaatttgaagacattgttgtttttgattgatgcaatttgttgctgaccttataactttgtgatgggtagcag
species | Glycine max |
transcript | GLYMA13G33920.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGCEST: gi|17519618|gb|BM188660.1|BM188660
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGCEST: gi|151397360|gb|EV267233.1|EV267233
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGCEST: gi|10845804|gb|BF068846.1|BF068846
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGCEST: gi|192294635|gb|FG986484.1|FG986484
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttatatttttactctcaacttttgcttcagatgtttttttttaaattatatttttgcaaattgcggattccagaaaatttgaagacattgttgtttttgattgatgcaatttgttgctgaccttataactttgtgatgggtagcag
- - - - - - - - - - - - AGCAAG