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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag

Basic information

species Glycine max
transcript GLYMA13G32940.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtacttt--gctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag
||| || |||||||| || |||||||| || ||  | ||||| ||||| || || || |||   |||||||||||||||||||||||||| || || ||||||    |   | | ||  |||         |  ||  | ||   || |   | ||  | | |||   | || || | |    | | ||  |     |||||                       
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgtaccttc---taagacaataccatgaaccttcattagattgactatcatcttgaatttcttcttcgagttccatagtctcacatgatatgacaatgtttttt----------------------

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G180335_T01 (Zea mays), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag
||||||||||||||| || ||||||||||||||  |  | || ||||| || || ||  |   |||||| ||||| |||||||| || ||||| ||| ||||| |      ||  |   |   ||||| ||||  |     ||| |    | |  |  || |    ||   ||   ||| ||   |  |||    |||  |  || |||              
GGATATAATGGACAGGGGCACTGATGCCCGGAACTTTCTGCTGGGAAATGTGATCCCCTTAAAACTTGGCTATGTTGGTGTTGTTAACCGCAGCCAGCAGgtacttctttctc-tatcttggttaaggttattggtt---cgcacaagtttgtcgaactgaag---gcctcatctgcatcaacaat--tatagcgtttccatcttgttg--------------

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag
|||||| |||||||||||||||||||| |||||||   | || ||||||   |||||||| |||||||| || || || ||||||||||| ||||| |||||||         || ||||   | |    ||||    |     | | |  ||  | ||     |||  | |     ||||    | |    | | || || |||  || ||           
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaa---------accctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtga----ccacttctacttttgtgcttg----------

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaata-tgcaatttttaatttattgtttcatcatattag
|||||| ||||||| |||||||||||| || || ||  | || ||||| ||| ||||||| |||||||| || || || |||||||||||  | ||||||||||    || |     ||  || ||   |   |||  |||   | | | | |      |  |||   | |  |||| |||   ||| |  | |  || |  | |||||               
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaa----acctgtggttgctcacaactattgctttttaat-ttatttagtgtg-----gctcttcttttatgtgacttgagctttattgcttctgttctgtacttattt--------------

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacact-tcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag
||| || |||||||||||||| |||||||| ||| | || || |||||||| ||||| || |||||||||||  |||||||||| ||||| ||||| |||||||||      |      |||   || | || ||||| | |    ||| |  |    || |  || | |      |    |||| |||  |  | ||  |                       
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctattt---atacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692076|gb|AW760191.1|AW760191
EST:     TTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAG                         GATATTCAAATGAACCGGAGTATAAAGGATGCTCTTGTTGCTGAAGAGAAT
genomic: TTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacac ... atcatattagGATATTCAAATGAACCGGAGTATAAAGGATGCTCTTGTTGCTGAAGAGAAT