Sequence
atgc intronic sequence ATGC exonic sequenceGAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtgatgaaattatcactgtcatgacgtatgaactattaagcaagcagacttttagcatagtatttcatttttactctactgttcttatgcttta...
Basic information
species | Glycine max |
transcript | GLYMA13G31380.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 5'ss of exon 3
GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtgatgaaattatcactgtcatgacgtatgaactattaagcaagcagacttttagcatagtatttcatttttactctactgttcttatgcttta-
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GAGTGAAGCGTGTTGTTGATCTGTGCGCTGCTCCCGGAAGCTGGAGTCAGgtattccctgtgc--ccatt--tgcccccacatat-agctat----------gtttgttggtttggtagttcttgctgatatctctattcaca-attgcag
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtgatg--aaattatcactgtcatgacgtatgaactattaagcaagcagacttt-tagcatagtatttcatttttactctactgttcttatgcttta--
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GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatg-gtgatcctaggttgttactact----cacattctgcacaatgtaaattggcttagtcacttagtagatctctcatagaagaaagaagaatccgtttaaa
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 3
GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtgat---gaaattatc-----actgtcatgacgtat-gaactattaagcaagcagacttttagcatagtatttcatttttactctact-gttcttatgcttta
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GGGTCAAGCGTGTGGTAGATCTATGTGCAGCCCCTGGTAGCTGGAGTCAGgtatctgcaattgtgaaatgccttgtaaactgttatttccaacagaatcaatagggaagcag-ttataaagattgtgtgttatgttgatgaaactcgttcc---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151401979|gb|EV271792.1|EV271792EST: GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAG GTTTTGAGTCGTAAATTGTATCTACCAGCCAAGCTTGCACCTGATGCAAA
genomic: GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtga ... ttatttatagGTTTTGAGTCGTAAATTGTATCTACCAGCCAAGCTTGCACCTGATGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAGgtacaagtgatgaaattatcactgtcatgacgtatgaactattaagcaagcagacttttagcatagtatttcatttttactctactgttcttatgcttta
- TGAAGC
- - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGGA