Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagattttttatggcattttggatttcatcaattgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcctcccattt...

Basic information

species Glycine max
transcript GLYMA13G28910.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g11850.1 (Oryza sativa), 5'ss of exon 4
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagatt----ttttatggcattttggatttcatcaattgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcc--tcccattt-------------------------------
 ||| || |||| || |||||| || | ||||| ||  ||||||||||    || || || ||||| |||||||||||||||||||| ||||| | |||||| ||| | |     ||||||||  | ||  | |  |    |  || |||  | || |  |  ||      |   | |||| || || | ||||||  |   ||||                               
CAATCTGCAGCTTGCTGAAGATTTGGCCAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTTTCACATTGAGgtaagtggttcagcattttatggagtattacaatgtactcctgaattaaa--tctccattacttgt-----tatttttcat-atatattgatgtccattttgattttgaagaaaatattggcatgtgcattttacag

upper sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagattttttatggcattttggatttcatcaat-tgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcctcccattt
|||| |||| || ||||||||| |  | |||||||||||||| ||||||| ||||||| | ||||| |||||||| ||||||||||||||||| ||  |||| |||   || | | |    ||||  |   | | | | | ||    | | |        |     ||    |||     | || ||| |           
AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagtt--ttgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaa---gtcttggattttaataaagcag--------

upper sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 4
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagt-agattttttatggcattttggatttcatcaattgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcctcccattt------------------------------------------------
|||||||||||| ||||||||| |  |||| ||||||||||| |||||| |||| ||||| ||||| |||||||| |||||||||||||| || || |||||| ||  ||  | | |   || | |  |  | || |  | | |  | |  |    |   ||| | |||| |||  ||||||||| | | |  |    |                                                  
AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatatcaaaacactatt-acattattacat-acagtaaacatatggatggtgctgaaatggatc--attatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400772|gb|BM177554.1|BM177554
EST:     CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
EST: gi|23726311|gb|BU761144.1|BU761144
EST:     CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
EST: gi|6455624|gb|AW186307.1|AW186307
EST:     CAGTGACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATATGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT