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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccgtatacatgctagtaactgattaacaggctgccaaatgcatttgcag

Basic information

species Glycine max
transcript GLYMA13G28460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G109354_T01 (Zea mays), 5'ss of exon 4
TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccgtatacatgctagtaactgattaacaggctgccaaatgcatttgcag
|| | |||||| || || || || ||| | ||||||||||||||||| ||||||||| || | |||||||| || ||||     ||  ||| | |   |||| |    || || | | | |  || || |     |   ||||||       ||   |||                    
TGTCCAACAGGGCGCATCTCATTCAAGTTGTATGATTGGAATCCTGCAGAATTTCCTCGACGACTACGACACCAGgtat-----agtcttgctcta--agttca----tttaaca-tagaaccatattattttaaagggatgctatatgtgaatgtgcag--------------------

upper sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G18830.3 (Arabidopsis thaliana), 5'ss of exon 4
TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgt-tattgcagtttagtatttgaatagtggcaagatcttctaccgtatacatgctagtaactgattaacaggctgccaaat-gcatttgcag
|| | ||| |||||||| ||||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||||||| | ||| ||| | |||| ||||||||| ||  ||    | | |  | | |   |  | |    | |  |||| || | |  ||    || | | ||||||||
TGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTGGAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAAgtattctcaagaattatatattacagtttagtgttcaaa----gactatgtttaccttctcagaatctcaaagaactaat-atcttgcgattaatttgaatttgcag

upper sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 4
TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccg--tatacatgctagtaactgattaacaggctgccaaatgcatttgcag
||||  || ||||||||||| || ||||| ||||||||||||||||| |||||||| ||| | ||  | || |||||||||||||| ||| ||||| |||||||||||||  ||      ||    || ||      | | || | || ||   |||||||  ||||  ||||  ||| |||
TGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAgtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348335|gb|BM892867.1|BM892867
EST:     AGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAA                         ATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGC
genomic: AGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaa ... gcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGC