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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatatatgttatgacttatgactattatttaagatcattggtcaattttatccaagatgatttacccctgcttgatatgatttactaagttaaaaa...

Basic information

species Glycine max
transcript GLYMA13G28120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
GATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatatatgttatgacttatgactattatttaagatcattggtcaattttatccaagatgat--ttacccctgcttgatatgatttactaagttaaaaa-
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GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccacttt---ctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaactgctgaacctttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413042|gb|BF425062.1|BF425062
EST:     CAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCNNNNNNNCCAAG                         TATACACCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTT
genomic: CAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatata ... tgtttttcagTATACACCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTT