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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGgtactagagaaatataagtcttctcataaatccaaaaaaaaaaaatcagcctccactatagtctatattgtctgaccaaataattttgctcatcttgcag

Basic information

species Glycine max
transcript GLYMA13G27460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G27460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
CAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGgtactagagaaatataagtcttc--tcataaatccaaaaaaaaaaaatcagcctccactatagtctatattgtctgaccaaataattttgctcatcttgcag
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CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacacacatgatcctccaaccaactctgatcctgatct---ctccccaaacttttttttttctttttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318553|gb|GR832721.1|GR832721
EST:     TGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAG                         ATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCAC
genomic: TGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGgtactagaga ... catcttgcagATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCAC
EST: gi|23731110|gb|BU763666.1|BU763666
EST:     TGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAG                         ATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCAC
genomic: TGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGgtactagaga ... catcttgcagATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCAC