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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaattgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca...

Basic information

species Glycine max
transcript GLYMA13G26770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaattgaatcctataaccccaatccaacaccaacctaa-ttattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca-----
| |||    ||  | ||  |||||||||||||||| ||||| || |||||||| ||  ||||||||||||||||||   |   ||| ||||     |  |||  |   |   ||  ||||  || |||||     |   |   |      |||||       | ||  | |      
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctga--aaattctatctgagctgtcc--ccttattttagcttatcctggaaattattgct--gctggtccatgaggcatactcctacaaatctaccaaggt

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03430.t01 (Vitis vinifera), 5'ss of exon 4
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattca---catattaggagggcatcacatggctaaatttca-
|| |||| |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| ||||||||||  ||   ||||||    |       |        || || ||  |  |   |  ||    |||||     || || |||    |   |||| ||  | ||| 
GAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactattgaatatcttggaattgaattcttctcatccaaaagaaatgaaattttgttgattcaatttctaatatgagaatgtttgatgggtatttatcag

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaatt------gaatcctataacc-------ccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagg-gcatcacatggctaaatttca-
|| |||  |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| ||||||||||  || |      | || ||  ||         |  |||||| |  ||   ||  |||| ||  | | ||| |||  || | || | |    |   |||| ||    ||| 
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaa--atttagttgaat-caatttctgatgtgagaatgtatgtttaatgggtattgatcag

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03510.t01 (Vitis vinifera), 5'ss of exon 4
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca----
||||||  |||||| ||| |||||||||||||||| |||||||| |||||| | || |||||||| ||||||||||| ||   |||||   | |       |        || || ||  |  |   || ||    |||||  |  ||    || ||    |      | || |    
GAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAGgtgaggaaaatattgaagattttggaattgaattcttctcatccaaaagaaatgaaaatttgttgattcagtttctaacctgggattggttaatgggaattgatcag

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03460.t01 (Vitis vinifera), 5'ss of exon 4
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaatt---gaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca------------------------
|| |||| ||||||||||  ||| ||||||||||| |||||||| |||||| | || || ||||| ||||||||||   |||   |||   | |   |    |||      |  | | | | ||  | |  || |||   |   | | |   |      ||      ||| | |                        
GAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtgagaacattattgaagattgtccactttttcctttttgatacaattgaattcttcacatttaaaacaaatcaatggtttgttgattcactttctaatctgagaatggtcaatgggtattgatcag

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03480.t01 (Vitis vinifera), 5'ss of exon 3
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaattgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca-------------------------------
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| | ||||||||   ||  |||   | |       |||| ||||    | ||    ||| |   |||| ||||| |    | ||  |  ||   ||  | | ||||                                
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAGgtgagaacat--aattgaagattt---gtcca-cacccttttgatacaattgaattcttcacattcagaataaatgaatggctcgt-tgattcactttctgatctgagaatggttaatgggtattgatcag

upper sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03450.t01 (Vitis vinifera), 5'ss of exon 3
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaa---ttgaatcctataaccccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagggcatcacatggctaaatttca------------------------
|| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| ||||||| ||   |   |||||  || || ||    |      |  |   ||||   ||    |  | | |   | ||   ||   |      ||      ||| | |                        
GAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAGgtaagaacaatattgaagact-tatccattttttccttctgatacaattcaattcctcacattagaaagaaatgaaagtttgttgattcactttctaatatgagaatggttaatgggtattgatcag