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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgtttgctatttctacctgtcattttgggtaatatgaaaatagacacggttaatggaatgatcacataaggataaatatgtaccagtatggtatt...

Basic information

species Glycine max
transcript GLYMA13G26260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 3
GGAGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgtttgctatttct-acctgtcattttgggtaatatgaaaatagacacggttaatggaatgatcacataa-ggataaatatgtaccagtatggtatt
|| |||||||||||||| |||||||||||||||  |||||| || |||||||| ||||  || ||||||||||||||||| ||  |||| |||||||   |||    || || |  |  | | || | |  ||      |   ||     | |  |   || | ||    |||  || |  |  | |    ||||
GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcatttttccttcctcatgttgcttctttgttggtactttt-tcttcaaataaatttcagcaattagattccagatttattt-catgatttaactatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015177|gb|CX701919.1|CX701919
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|58025427|gb|CX712168.1|CX712168
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298164520|gb|HO014165.1|HO014165
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|151408761|gb|EV278569.1|EV278569
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298179325|gb|HO027796.1|HO027796
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298174291|gb|HO017627.1|HO017627
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|58021016|gb|CX707758.1|CX707758
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298170313|gb|HO018937.1|HO018937
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|31561148|gb|CD486986.1|CD486986
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|58024086|gb|CX710827.1|CX710827
EST:     ATGATGAAAACTTTACGTCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|209704174|gb|BW664792.1|BW664792
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298180377|gb|HO025578.1|HO025578
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|193639764|gb|FK590093.1|FK590093
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|192333246|gb|FK026127.1|FK026127
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCAGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|16348066|gb|BI973661.1|BI973661
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|208315861|gb|GE110605.1|GE110605
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298172532|gb|HO019572.1|HO019572
EST:     ATGATGAAAACTCTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|151393429|gb|EV263304.1|EV263304
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|298183104|gb|HO028367.1|HO028367
EST:     ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|163923182|gb|EH038294.1|EH038294
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG                         GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|209704173|gb|BW664791.1|BW664791
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|58021929|gb|CX708670.1|CX708670
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG
EST: gi|192298333|gb|FG992108.1|FG992108
EST:     ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG                         GCAAATAGCGGACAAAATACCAATGGGTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGCTGTCAG