1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatcattcccttccagagagtgtttacataaatatatgattgtaatacacatacgcagtctgtttgtgattgattctggcaacataatctggttt...
species | Glycine max |
transcript | GLYMA13G25690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTCEST: gi|19053359|gb|BM732026.1|BM732026
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTC
EST: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG GGAATAGTTCGAGGAAAAGTTG-ATCAGTTGCGGCGGTGCTTTGAGEST: gi|16346940|gb|BI972535.1|BI972535
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAA-GTTGGATCAGTTGCGGCGGTGCTTTGAG
EST: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatcattcccttccagagagtgtttacataaatatatgattgtaatacacatacgcagtctgtttgtgattgattctggcaacataatctggttt
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA