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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttacatttcctgattctgtatttgaagttttttactagttttttttagtttttttggggggtgggggggggggcgggggggtgttttttgtttgg...

Basic information

species Glycine max
transcript GLYMA13G25460.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193592476|gb|FK546982.1|FK546982
EST:     GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|19452590|gb|BM954000.1|BM954000
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|298166217|gb|HO009188.1|HO009188
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTTTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|26049086|gb|CA785539.1|CA785539
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|192321114|gb|FK013560.1|FK013560
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|18725114|gb|BM523597.1|BM523597
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|213602689|gb|DB968915.1|DB968915
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|209707209|gb|BW656827.1|BW656827
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAA
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAA
EST: gi|14126115|gb|BG790553.1|BG790553
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTGCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|209729488|gb|BW651841.1|BW651841
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|192299791|gb|FG990057.1|FG990057
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|19937699|gb|BQ081388.1|BQ081388
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|7591513|gb|AW707244.1|AW707244
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATAGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCGCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: gi|209705878|gb|BW675983.1|BW675983
EST:     GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG                         CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTT-CCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttacatttcctgattctgtatttgaagttttttactagttttttttagtttttttggggggtgggggggggggcgggggggtgttttttgtttgg

- - - - - - - - AAGAAG
- - - - - - - -  AGAAGC
- - - - - - - - -  AAGCTG
- - - - - - - - - - AGCTGC
- - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggggg