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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATGACGAGCAGTCTGGAACCTGGAAACGCAGACATGGGTATGATCGTGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgattgaacatgcctttcttcacgaactgctattatgtttctcttgatgcccatgtataaggtgtagaccctcttctttgagttgcactgtaggg...

Basic information

species Glycine max
transcript GLYMA13G23700.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017104|gb|CX703846.1|CX703846
EST:     TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATG                         ATCCAGAAGAGGATCCTTTTGCC
genomic: TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgatt ... atttttgcagATCCAGAAGAGGATCCTTTTGCC
EST: gi|193315045|gb|FK279655.1|FK279655
EST:     TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATG                         ATCCAGAAGAGGATCCTTTT
genomic: TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgatt ... atttttgcagATCCAGAAGAGGATCCTTTT
EST: gi|254317804|gb|GR826788.1|GR826788
EST:     TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATG                         ATCCAGAAGAGGATCCTTTTGCC
genomic: TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgatt ... atttttgcagATCCAGAAGAGGATCCTTTTGCC
EST: gi|6747619|gb|AW318132.1|AW318132
EST:     TGCAAATGATGAAGAAGCTATACCTATCATTGAAGCTAAACCAACTGATG                         ATCCAGAAGAGGATCCTTTTGCCAAAAGGATAGAAAATAAGAATAATAGAA
genomic: TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgatt ... atttttgcagATCCAGAAGAGGATCCTTTTGCCAAAAGGAAAGAAAATAAGAAGAATAGAA
EST: gi|8827706|gb|BE211445.1|BE211445
EST:     TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAGAACCAACTGATG                         ATCCAGAGGAGGATCCTTTTGCCAAGAGGAAAGAAAATAAGAAGAATAGAA
genomic: TGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgatt ... atttttgcagATCCAGAAGAGGATCCTTTTGCCAAAAGGAAAGAAAATAAGAAGAATAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATATGACGAGCAGTCTGGAACCTGGAAACGCAGACATGGGTATGATCGTGCAAATGATGAAGAAGCTATACCTATCATTGAGGCAAAACCAACTGATGgtaagtgattgaacatgcctttcttcacgaactgctattatgtttctcttgatgcccatgtataaggtgtagaccctcttctttgagttgcactgtaggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt