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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACAGAGATCGTAGAACAGATAGATCGAGATCTGCAGCGTACACATCCAGATTTGCCATTTTTCTCAGGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaactgcaccaccaaaaatctataaaggttttctgttaatttgttgtaagtttgggtttttagctgagctacttatcaaacaattctcaattttgtttccacttttcagtgttgagtgataaactttagggggttcgactcttattgaagtttttgttgatactttaactatag

Basic information

species Glycine max
transcript GLYMA13G23560.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208185655|gb|GD986298.1|GD986298
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|208106877|gb|GD902382.1|GD902382
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|208122096|gb|GD919021.1|GD919021
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|193545261|gb|FK499484.1|FK499484
EST:     GGGGAGTCGTCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT