1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAATTCTACGAAAGAGACGAGCAGGGAAACTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTgtaagtttggaattatgaattagtagtatattttatataaagaatttctaccgtgtcacagttaatttggagtattaatacggttgattttataatcaat...
species | Glycine max |
transcript | GLYMA13G22530.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACT GAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGEST: gi|14991644|gb|BI317317.1|BI317317
genomic: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTgtaagtttgg ... gttaatttagGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAG
EST: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACT GAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGEST: gi|192302161|gb|FG997269.1|FG997269
genomic: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTgtaagtttgg ... gttaatttagGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAG
EST: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACT GAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAG
genomic: CCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTgtaagtttgg ... gttaatttagGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAATTCTACGAAAGAGACGAGCAGGGAAACTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTgtaagtttggaattatgaattagtagtatattttatataaagaatttctaccgtgtcacagttaatttggagtattaatacggttgattttataatcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG