1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattggtgaacttgatgtatgagaaaactgcatttggaaatacttagtatttggaaattaatgatattggttatttttctgaccttccgcag
species | Glycine max |
transcript | GLYMA13G20790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|21677612|gb|BQ629963.1|BQ629963
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttccgcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTATTGATGCCTAACCTTTATEST: gi|254321137|gb|GR827586.1|GR827586
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttccgcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|7924579|gb|AW830605.1|AW830605
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttccgcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttccgcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattggtgaacttgatgtatgagaaaactgcatttggaaatacttagtatttggaaattaatgatattggttatttttctgaccttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC