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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGgcatgtaacttaaagcagttgtcagtggtttgctgttatcttttagcttaggtttatgctgattattggatgtcactccaggaatggttcaactttcaaatctaactacacgtaattttttag

Basic information

species Glycine max
transcript GLYMA13G20220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 4
ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGgcatgtaacttaaagcagttgtcagtggtttgctgttatcttttagcttaggtttatgctgattattgga--tgtcactccagga-atggttcaactttcaaatc-taactacacgtaattttttag---
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ATGGACGATTTGACAGTGAATACTTCCAACAAACTGAAGAGTCTAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAACCAAgtaagt---ctatgtggattgt--attactta--attatcagaaaagatgcactattttctattatcagagctgcatcttttggctatgtttcctgtatcacattataatcttctttaacatttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308222721|gb|HO760631.1|HO760631
EST:     AACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAG                         GACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATG
genomic: AACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGgcatgtaact ... aattttttagGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATG