1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTAGCGTGGTCGATCTGTCAACTCAAACTTCTGGCACTTTGACACGGGATTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgtaatgtagtaccaaccctcacattctattcttctgtactttatatctgaagtgatctttttttattaaaattaaaatgcag
species | Glycine max |
transcript | GLYMA13G20210.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAG ATGCAAATGCTTTTAATCACGAGGCTAGTCATTTCCTTAATGGAAGTGGTTEST: gi|11411878|gb|BF423889.1|BF423889
genomic: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaatgcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTT
EST: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAG ATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTTEST: gi|23727289|gb|BU761673.1|BU761673
genomic: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaatgcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTT
EST: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAG ATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTTEST: gi|7233489|gb|AW568834.1|AW568834
genomic: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaatgcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTT
EST: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAG ATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTT
genomic: TTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaatgcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGCGTGGTCGATCTGTCAACTCAAACTTCTGGCACTTTGACACGGGATTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgtaatgtagtaccaaccctcacattctattcttctgtactttatatctgaagtgatctttttttattaaaattaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG