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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtccttattttttttgtcattattgtggagaggaacttgtgttcttatactatatatttatttatgtttgcag

Basic information

species Glycine max
transcript GLYMA13G19640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62020.1 (Oryza sativa), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgatt--ttcttgtccttattttttttgtcatta-ttgtggagaggaacttgtgttcttatactatatatttatttatgtttgcag------
|| || |||||||| ||||||||||||||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||| | ||    | |  |  |||||| ||     ||  ||    |   |  ||     | | | | | |   |||||  ||| ||          
GTGCGCATTGCTCGCATTTTCAATACATATGGCCCTCGAATGTGTCTAGATGATGGCCGTGTGGTTAGCAATTTTGTTGCCCAGgttcgtttaacacgtaccgctattttattaacttttggttacacatttgcgctgtcaatatgaaattctgagtttatacatgattatcattgtag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtccttattttttttgtcattattgtggagaggaacttgtgttcttatactatatatttatttatgtttgcag---------------
||  | ||||| ||||| ||||| |||||||| || || |||||||| ||||||||||| || |||||||| || || || ||||||||  ||  ||     |||  || |  || || | |   |||| ||   || |  ||  | | ||   ||| |||   ||  ||               
GTGAGAATTGCGCGAATATTCAACACATATGGCCCTCGTATGTGTTTAGATGATGGGCGAGTTGTTAGCAACTTCGTCGCTCAGgtttgtgttaatt-----tatgattctaatcctt-tggaaaagagaaataagtatatttgaagtttagcattacttactattaaagatgcctcatttccag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G370048_T01 (Zea mays), 5'ss of exon 5
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtccttattttttttgtcattatt-gtggagaggaacttgtgttcttatactatatatttatttatgtttgcag
|| |||||||| || ||||||||||||||||| || || |||||| | |||||||| ||||| || ||||||||||||||||||||| | ||| ||     ||||    | | |  || || || | ||     || ||    ||  |     || |  || |  ||| ||
GTGCGTATTGCCCGCATTTTCAATACATATGGTCCTCGTATGTGTCTCGATGATGGCCGTGTGGTCAGCAATTTTGTTGCACAGgttcg-tttgctacatattatggactctatttttcttagttgtgatcctattatgcatgtaagcagc-catatgattgtccttgaag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtcct-tattttttttgtcattattgtggagaggaacttgtgttcttatactatatatttatttatgtttgcag
|| |||||||| || ||||||||||||||||| || || |||||  | || ||||| ||||| || ||||||||||||||||||||||| ||      |  | ||   | ||| || |  |||||       | || ||   ||| || ||  || |  |  |  ||||||
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgat-----atttatgcatttaaac-atccatatgatcgtccttgcag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttg----attttcttgtccttattttttttgtcattattgtggagaggaacttgtg---ttcttatactatatatttatttatgtttgcag
||  | ||||| || || || || |||||||| || || |||||||| |||||||| || || |||||||| |||||||||||||||||    | ||| |  | || ||   ||     |      |      ||||||  |   | |||| | |    |||  || || | |    
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag--

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtccttattttttttgtcattattgtggagaggaacttg----tgttcttatacta-tatatttatttatgttt--gcag
||| | |||||||| |||||||| |||||||| ||| | |||||  | |||||||||||||| ||||| || |||||||| |||||||   |   |  ||   ||         |  | | ||  | ||    |||       ||| | |  | |||  |   |||| | |  ||||
GTTAGAATTGCTCGTATTTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGTTGCCCAGgtttagctccttcatcaacataaagacaaccgctttcgtataaagccttttgaaaacactctgacagaactattgtggcttatatctatgcag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g02710.t01 (Vitis vinifera), 5'ss of exon 5
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttct-------tgtccttattttttttgtcattattgtggagaggaacttg--tgttcttata----ctatatatttatttatgtttgcag-------------
|| ||||| || || ||||||||||||||||| || || |||||| | |||||||||||||| |||||||||||||||||||||||||||| | ||       | ||||||   || |    |  |   || |  | | |||     || |||||    ||| |  ||| || |   ||  ||             
GTACGTATAGCACGGATTTTCAATACATATGGGCCTCGTATGTGTATTGATGATGGGCGTGTGGTTAGCAATTTTGTTGCACAGgtttgatctcctgacttattttccttacagttctgccaaacacaatgaaccgaatcttagacatttttataagttctaaagtttttttaactgttatagctatgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9205083|gb|BE331307.1|BE331307
EST:     GCCGCATGTGTTTGAATGATGGGCGTGTCG-TAGCAAATTTGTTGCACAG                         GCTATTCGTACACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgatttt ... atgtttgcagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|19270518|gb|BM886774.1|BM886774
EST:     GTCGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: GTCGTTAGCAATTTTGTTGCACAGgtttgatttt ... atgtttgcagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA