1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaagataatgtttttatatgtgtagagtcctctcttgcctcctctttctttttggtcagaatggaaaggttaatagtgctatgtgtgtggattatttctatctgctatttgtgctaaccttccagtgattaatatgcccag
species | Glycine max |
transcript | GLYMA13G18950.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATEST: gi|151400304|gb|EV270118.1|EV270118
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGAT
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|298181570|gb|HO025745.1|HO025745
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|192301726|gb|FG997640.1|FG997640
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|298190384|gb|HO032505.1|HO032505
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGGAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|151398563|gb|EV268434.1|EV268434
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|298192730|gb|HO033164.1|HO033164
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|151403355|gb|EV273165.1|EV273165
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|209718615|gb|BW662707.1|BW662707
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|254347887|gb|GR854136.1|GR854136
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|213595497|gb|DB966551.1|DB966551
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|192312569|gb|FK005027.1|FK005027
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: CTCTGA-GAATAATCCCCGTCATCTCAAATTGGTGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|213591304|gb|DB959874.1|DB959874
genomic: CTCTGAAGA-TAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|151397287|gb|EV267160.1|EV267160
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|298184881|gb|HO030094.1|HO030094
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|209707137|gb|BW656754.1|BW656754
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATEST: gi|12774559|gb|BG239486.1|BG239486
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAAT
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAAGCTGTEST: gi|14258415|gb|BG881323.1|BG881323
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAA-GCTGT
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|209709595|gb|BW661922.1|BW661922
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|209714364|gb|BW677064.1|BW677064
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGACATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCAATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|298174324|gb|HO017660.1|HO017660
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|192312568|gb|FK005026.1|FK005026
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: CTCTGA-GAATAATCCCCGTCATCTCAAATTGGTGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGEST: gi|192300056|gb|FG991860.1|FG991860
genomic: CTCTGAAGA-TAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
EST: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAG ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
genomic: GCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaaga ... atatgcccagATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaagataatgtttttatatgtgtagagtcctctcttgcctcctctttctttttggtcagaatggaaaggttaatagtgctatgtgtgtggattatttctatctgctatttgtgctaaccttccagtgattaatatgcccag
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA