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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacctgttcatttactttcagagcagtcaaatttccttagttgtaccacatttaacttttttatttagggttagcttctaatttatcctgt...

Basic information

species Glycine max
transcript GLYMA13G18670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
TTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacctgttcatttactttcagagcagtcaaatttccttagttgtaccacatttaacttttttatttagggttagcttctaatttatcctgt-------------------
| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||| || || || ||||| || ||||||| || |     |  || |||   |||      |   || ||  | |  || ||       |  ||| || ||  |     |     |||||| | || |                   
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacc-tttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaa-aatgattaattttttctatcccaaattgcatgttgcag

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
TTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgta--tgcatatacctgttcatttactttcagagca---gtcaaatttccttagttgtaccacatttaacttttttatttagggttagcttctaatttatcctgt
| ||| | ||||| || ||| ||||||||||||| ||||| ||||| ||  |     ||||||||||||| || || || |||||||||||||||||||||||  | || ||  |   | | |  ||  | | |     ||   || ||     ||   |  ||  | |  |  |   ||  ||| ||||  |   ||       
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaatgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgct-gcttgcggtcagctgattgcttcct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315781|gb|FK008491.1|FK008491
EST:     GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAG                         GGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT
genomic: GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatat ... tgtgttacagGGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT
EST: gi|193644241|gb|FK590336.1|FK590336
EST:     GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAG                         GGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT
genomic: GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatat ... tgtgttacagGGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT
EST: gi|192315782|gb|FK008492.1|FK008492
EST:     GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAG                         GGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT
genomic: GAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatat ... tgtgttacagGGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATT