1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGACAGCCAGCAGAATAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGgtcagtggtaactcttcagaagtatttgcttatgttgaaaatattgaaaactgaaaagaacataggcagaaacctgaaatatatttatacttacaatgttgaag
species | Glycine max |
transcript | GLYMA13G17800.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTG GTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGCEST: gi|17964335|gb|BM271072.1|BM271072
genomic: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGgtcagtggta ... aatgttgaagGTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGC
EST: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTG GTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGCEST: gi|37996031|gb|CF807620.1|CF807620
genomic: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGgtcagtggta ... aatgttgaagGTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGC
EST: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTG GTAAAATCAATA
genomic: TAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGgtcagtggta ... aatgttgaagGTAAAATCAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGACAGCCAGCAGAATAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGgtcagtggtaactcttcagaagtatttgcttatgttgaaaatattgaaaactgaaaagaacataggcagaaacctgaaatatatttatacttacaatgttgaag
- - - - - - - - - - CATGGA
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - CTGCAG