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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTTTTGAGGAGCATGGTAGTGCTGGGCAAGGTGGGAAAAAATCAACAAAGACTTTGATGTTCTTTGAGGGTTGCCCGAAACCTTTAGGTTGCACTgtaagttcaataactttacatattctggtacacaaatttcagtgttggtacatacacatattattacagtctttgaattactctattatgtctttgttat...

Basic information

species Glycine max
transcript GLYMA13G17510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAATTTTTTGAGGAGCATGGTAGTGCTGGGCAAGGTGGGAAAAAATCAACAAAGACTTTGATGTTCTTTGAGGGTTGCCCGAAACCTTTAGGTTGCACTgtaagttcaataactttaca---tattctggtacac-aaatttcag---tgttggtac----atacacatattattacagtctttgaattactct--attatg-tctttgttat-----------
 || ||| | |||   |||| |||| || | |||| || ||| |||    | |||||||| ||||| ||||| || |||||||||||||| ||||| || |||||||| | ||| ||  |   | || |   |||  | ||    |   ||||  ||     || || ||  |||  | |     ||| || |||  | |||| |  ||| | |           
AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag

upper sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 4
CAAATTTTTTGAGGAGCATGGTAGTGCTGGGCAAGGTGGGAAAAAATCAACAAAGACTTTGATGTTCTTTGAGGGTTGCCCGAAACCTTTAGGTTGCACTgtaagttcaataactttacatattctggtacacaaat---ttcagtgttggtacatacacatattattacagtctttgaattactctattatgtctttgttat---
 || ||| |||| | |||||| ||||||||||||| |||||| ||||     |||||||||||||| |||||||||||||| |||||||| || || ||||||||||  | |  | || |||  |  || |  || |   |||  | |||| |   | |  ||||||     | || ||     |  || ||  ||  |   |   
GAAGTTTCTTGAAGGGCATGGGAGTGCTGGGCAAGATGGGAAGAAATTGGTGAAGACTTTGATGTTTTTTGAGGGTTGCCCAAAACCTTTGGGCTGTACTgtaagtttcaaatatataaatagac--gtgcttaagtctattctattttggaatgaaaaagtattatc----ttttagagcctatggatgataactaggacctaca