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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgtaaataatttcactcaaaaagtaaaaaaaaacaatgacacatggttaacttggactttaatttgattcattgctagctcaattctcacatgtgtacacttttttcttcttcatatag

Basic information

species Glycine max
transcript GLYMA13G17050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17050.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g25550.1 (Oryza sativa), 5'ss of exon 4
TTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgta--aataatttcactcaaaaagtaaaaaaaaacaatga------cacatggttaact-tggactttaatttgattcattgctagctcaattctcacatgtgtacacttttttcttcttcatatag-------------------------------------
|| ||  |||| |||||||| ||  ||| ||| || ||||| || || |||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||  || | | |||| || | |||  |   |   |   |       | | |  ||     | | |||||  | ||  |    |     |      | |  |  | |  | |  |||     | |                                       
TTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGgtactaaaattgtcacacatatagtctacctagctagctagttttgtaaacgagtagtggcgaagtttaacataatatacctttcatgtaccctaaagaaataaaaatatatacctttcatgtttcaactaattggctattaatattacttcatgttattgcag

upper sequence: GLYMA13G17050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 4
TTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgtaaat-----aatttcactcaaaaagtaaaaaaaaacaatgacacatggttaacttggact-ttaatttgattcattgctagctcaattctcacatgtgtacacttttttcttcttcatatag
|||||  | || || || || || ||||| ||||||||||| ||||||||  |||| ||||| |||||||| ||||| || ||||| ||||| ||||||||||| |     |  || | || ||     |   ||   ||     |||  |||  ||||| |  ||||  | ||  ||| |   |||                                     
TTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATGCTGCTCCAGAGTACATTATGACAGgtaattcagtaaggtttaatccaatctagattgaatgtaaaagggcata-ttactttggagtactaataagtttgcttgtt--ttcag------------------------------------