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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACACCACACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATCAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattgttatattaatcttgatgttcatgaaaaggcaatagatcttattgcttttctcaatgtcag

Basic information

species Glycine max
transcript GLYMA13G16040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G418232_T01 (Zea mays), 5'ss of exon 2
GCTTACACCACACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATCAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattgttatattaatcttgatgttcatgaaa---aggcaatagatcttattgcttttct----caatgtcag---------
||||||||| ||||| ||||||||||| ||||| ||||| |||||  ||||||| ||||| || |  ||| |||| || ||| |  | || ||||||||||| |   || ||   ||  ||   |||  |||||       | || | || |  | |  || ||     |  | ||          
GCTTACACCCCACAATTGCTACTCTCAGCAACCTAAACCACAGCCCGTCAAATATCGAGGAGTGGTGCATCTGTCGGACATGCTCATCCACTACAATCAGgttaaccttttttgtttggtcaatatgagcatgatttctgtgtaacaaatgtgttggacttcctactaaagcgccatctggtacag

upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 23
GCTTACACCACACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATCAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaact-attgt------tatattaatct-tgatgt-tcatgaaaaggcaatagatctt--attgcttttctcaatgtcag-----
||| ||| | |||||||| |||||||| ||||||||||||||||| || || ||||| ||||| || ||||||||||| ||| | ||||| ||||||| ||||| | |||         |||||||| | || | | |  ||| | || |||   | ||  |||| |    | | | |  |     
GCTCACATCTCACAACTGTTACTCTCAGCAACCAAAACCCCAGCCAATTAAGTACCGTGGGGTGGACCATTTGTCTGACATGCTGGTTCACTACAATCTGgtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacag

upper sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 23
GCTTACACCACACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATCAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgta---actattgttatattaatcttgatgttcatgaaaaggcaatagatcttattgcttttctcaatgtcag-----------------------------------------------
||| ||| ||||||| ||||||||||| ||||||||||| || |||||||| || || || || || |   |   ||||||| | || ||||| |||||||||   |  ||   |  ||   |||  ||| |||  |     |     ||  |   |  | ||| ||| |                                                  
GCTAACATCACACAATTGCTACTCTCAGCAACCAAAACCACAACCTATCAAGTATCGTGGCGTTGAGCGGCTCAGTGATATGCTCGTACATTATAATCAGgtacaaaggatgtatgcatatgtctaaatgatca-aatgtctcttgcaatgctggagtgtctcttaatattgtattaaatttgacaaaacatcctattggattccgcgtggtgtttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208205826|gb|GE007077.1|GE007077
EST:     AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG                         ACATCGGATATACTATACTATGAAGTACTTGACATCCCT
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACATCGGATATACTATACTATGAAGTACTTGACATCCCT
EST: gi|151406510|gb|EV276325.1|EV276325
EST:     GGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG                         ACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: GGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: gi|7692406|gb|AW760513.1|AW760513
EST:     GTTCATTACAATCAG                         ACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: GTTCATTACAATCAGgtaactattg ... tcaatgtcagACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: gi|14990404|gb|BI316077.1|BI316077
EST:     AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG                         ACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA