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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcctaaagtagttagacgttcttgaatcatatattaaagttgcttctatcatacttcgttatttattgtag

Basic information

species Glycine max
transcript GLYMA13G15140.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 4
TGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgta----tggtcctaaagtagtta-gacgttcttg--aatca--tatattaaagttgcttctatc-atacttcgttattt--attgtag----------------------------------------
| || ||  |  |||||||| | |||||||||||||| ||||||||||| || ||||| | ||||||||| || ||||||||||| ||||||||||||| |||    |  |  ||    |  |  |||| | ||   ||| |  || |  ||| |   ||| |   ||||    | ||||  || ||                                          
TTGGTCCCATGACCTACTTGCTCCTGTCAAAACCAGCAAAGGGTGTTGAAAAATCATTCTGCCTTCTTTCTCTGATTGACAAGATTCTTCCTGTCTACAAgtaagaataatattacgccaactgtgacgcttttagaaattagctagaccaaaataaattcaaaagatacaatttcatttggatagtgctcgaaaccataactggtttatgtggcatttattttggcag

upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 4
TGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcctaaagtagttagacgttcttgaatcatatattaaagttgcttctatcatacttcgttatttattgtag--------------------
| || ||||| |||||||||||| | |||||||||||||||||| | ||||| || ||||| ||||| ||  | || |||||||| |||||  |||||| ||  ||   ||      ||  | | |     ||  |  |||  |     ||||       ||| | ||  | | ||                     
TTGGCCCTGTGTCCTACTTGTTGTTATCAAAACCAGCTAAGGGTCTGGAGAAATCCTTTTCTCTTCTCTCGTTGATCGACAAGATTCTTCCAATCTACAAgtgaggagttaggccttttctatgataa-agatagttaatttcatgcatttctggtgggtttcttgataaaatatactaataatgaataccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208150434|gb|GD946965.1|GD946965
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcct ... tttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
EST: gi|208160573|gb|GD964679.1|GD964679
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcct ... tttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA