Sequence
atgc intronic sequence ATGC exonic sequenceCTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcataattgtttctgtatttaccaaaacagttgttcatctttcaatgggttgatagatactgaatcattaggggtctaccattatctccttttat...
Basic information
species | Glycine max |
transcript | GLYMA13G09520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcataattgtttctgtatttaccaaaacagttgttcatctttcaatgggttgataga-tactgaatcattaggggtctaccattatctccttttat-----
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CTTCTGGAGGTTAATAGAATGCTCAGAGCCGGCGGTTATTTTGCTTGGGCAGCACAGCCTGTTTATAAGCATGAAGAGGCTCAGCAAGAAGCATGGAAAGgta-tgcattatttcctatgtac---ccctagtaatttttgttccattgtgggggaaacacactagtctttcatttat--tctgttggtattttcccacatgacga
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcataattgtttctgtatttaccaaaacagttgttcatctttcaa--tgggttgatagatactgaatcattaggggtctaccattatctccttttat
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CTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACTTTGTTTGGGCTGCACAACCCGTTTACAAACATGAGGATAACTTGCAAGAGCAGTGGAAAGgt---------ttgtatat-tattcaacaaaataatttgtctgctatggagtttaactaaaatatgg-gtgttgcttctgcgctttgattatctttttcag-
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcat--aattgtttctgt---atttaccaaaacagttgttcat--ctttcaatgggttgatagatactgaatcattaggggtctaccattatctccttttat
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CTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGAACAGTGGAAAGgtagctcatccaatacatcctattcaaagtatagatacagatgtttgtggctagcactatctttctgaatt----gctttttgaagttttatattctttatctt---
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ24461 (Selaginella moellendorffii), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcataattgtttctgtatttaccaaaacagttgttcatctttcaatgggttgatagatactgaatcattaggggtctaccattatctccttttat
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CTTGCGGAAGTTAATCGCATAATGCGCGGTGGGGGCTACTTTGCATGGGCAGCTCAGCCTGTTTACAAACACGAGCCAAGTAGTTTGCAGGCATGGAACGgta---------tgtttctaagcctctcaaaat--ttggatttcgcttataagtttcctgcattcggcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412439|gb|EV282251.1|EV282251EST: CAAACATGAAGAGACCCTTCAAGAACAATGGACAG AAATGGAGAACCTGACAGCTAGCATTTGTTGGGAACTTGTACGAAAGGAGG
genomic: CAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcata ... gacttaacagAAATGGAGAACCTGACAGCTAGCATTTGTTGGGAACTTGTACGAAAGGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGgtagctcataattgtttctgtatttaccaaaacagttgttcatctttcaatgggttgatagatactgaatcattaggggtctaccattatctccttttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC