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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCATGTGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATGCTGAAGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAGgtatcttaccactaatccatgcatgtttggaaatcatctcatgttttcaaaacaagttgaactaaaacatgcactaaaaccaattgttactttttggacttctattatagtttaatgatttctgttagctaatggggtgcatatgttttggaatttcag

Basic information

species Glycine max
transcript GLYMA13G05230.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13563220|gb|BG551440.1|BG551440
EST:     AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAG                         CGGATGGATTATCCATACCAGAAGAGGNNNNNNNTGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAGgtatcttacc ... ggaatttcagCGGATGGATTATCCATACCAGAAGAGGAAAAAAATGCTTATGAATGGCTAC
EST: gi|254349262|gb|GR860060.1|GR860060
EST:     AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAG                         CGGATGGAT-ATCCATACCAGA-GAG-AAAAAA-TGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAGgtatcttacc ... ggaatttcagCGGATGGATTATCCATACCAGAAGAGGAAAAAAATGCTTATGAATGGCTAC
EST: gi|254339339|gb|GR848056.1|GR848056
EST:     AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAG                         CGGATGGATTATCCATACCAGAAGAGGNNNNNNNTGCTTATGAATGGCTAC
genomic: AGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAGgtatcttacc ... ggaatttcagCGGATGGATTATCCATACCAGAAGAGGAAAAAAATGCTTATGAATGGCTAC