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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAAGCTGGAGAAGTCTATGGTGGCAGATAACGAGTCTGGTAAAAGCATAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaatcaaagatgatttactttatgcttgtgtgaaaacctttaagttcttcatttgattatgattaattatgtagcatatagagaagtatggtt...

Basic information

species Glycine max
transcript GLYMA13G04940.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G04940.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g27340.2 (Oryza sativa), 5'ss of exon 3
GGACAAGCTGGAGAAGTCTATGGTGGCAGATAACGAGTCTGGTAAAAGCATAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgt--atgatgaatcaaaga------tgatttactttatgcttgtgtgaaaac-ctttaagttcttcatttgattatgat-taattatgtagcatatagagaagtatggtt
|||||||||||||||||| |||||||| || |||||||| || || ||| | ||||| || ||  | || || || || ||||| ||| | |||   |||||        |  ||  |       |||||  | || || |  |  || ||   ||| || | ||   ||| |   ||  |  ||||    |  |  |            
GGACAAGCTGGAGAAGTCGATGGTGGCGGACAACGAGTCCGGGAAGAGCGTCATGAGCGAGGTGCGGACCAGCTCCGGCATGTTCCTCGAGAAGAAGCAGgtcagcagccagccaccgcaccgcctgattc-cgttctgttctttcgataatgttttgaggtgttggattggtcccgacctggttataggcctcactggct---------

upper sequence: GLYMA13G04940.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G520535_T01 (Zea mays), 5'ss of exon 3
GGACAAGCTGGAGAAGTCTATGGTGGCAGATAACGAGTCTGGTAAAAGCATAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaatcaaagatgatttactttatgcttgtgtgaaaacctttaagttcttcatttgattatgattaattatgta---gcatatagagaagtatggtt-
||||||||||||||||||||||||||| ||||||||||| ||||| ||  |   |||||| ||  | || || || || ||||| ||| | | |   |||||  |  ||    |     ||  | || |      |   |    | | | |||||   ||||| |  | |     ||| |   |  ||||  | ||  |  || 
GGACAAGCTGGAGAAGTCTATGGTGGCCGATAACGAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagacggcactccaatcgatttcacttcctttcca---tcgtcatgttctgggtttgaatg-gttccgagatggaaatgagtataatgtagattctttg

upper sequence: GLYMA13G04940.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G168506_T02 (Zea mays), 5'ss of exon 3
GGACAAGCTGGAGAAGTCTATGGTGGCAGATAACGAGTCTGGTAAAAGCATAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgt----atgatgaatcaaagatgattt-actttatgcttgtgtgaaaacctttaagttct--tcatttgattatgattaattatgtagcatatagagaagtatggtt
||||||||||||||||||||||||||| || ||| |||| ||||| ||  |   |||||| ||  | || ||||| || ||||| ||| | |||   |||||    ||   | |  |  |  ||||| ||||| |     |  |  | | | |  ||||   |  || |   |||   ||    ||| ||| |||| |  | ||   
GGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggcactacggtcgatttcactttctttccat-cgtcatcttctgggttcgaatggttcggagatgg--aaaggagtatcatgtaga-atctttg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189073|gb|HO037476.1|HO037476
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192303526|gb|FG995932.1|FG995932
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|298195533|gb|HO043924.1|HO043924
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATT
EST: gi|298175821|gb|HO018418.1|HO018418
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192298241|gb|FG991717.1|FG991717
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151411869|gb|EV281680.1|EV281680
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|213603274|gb|DB970395.1|DB970395
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCT
EST: gi|120491083|gb|EH219250.1|EH219250
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192298016|gb|FG993250.1|FG993250
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCGTGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151394021|gb|EV263892.1|EV263892
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|254330721|gb|GR841986.1|GR841986
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|23062388|gb|BU578509.1|BU578509
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151407677|gb|EV277492.1|EV277492
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192330838|gb|FK021611.1|FK021611
EST:     GTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: GTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151395404|gb|EV265281.1|EV265281
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|120530553|gb|EH258686.1|EH258686
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|213611820|gb|DB958886.1|DB958886
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT