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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatactaatttctaacaagttgtggttttggctccctttcttgatcag

Basic information

species Glycine max
transcript GLYMA13G02420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaa-atggggatactaatttctaacaagttgtggttttggctccctttcttgatcag-------
 |||  |  |||||||| |  |||||||||||||| || |||||||| ||||||||||||||||| || ||||| ||| |  |||| ||||||||||||||| || ||  |||| |||| ||    |  || |  |||   | ||||  ||    ||   | || |  | |   |     ||   ||| |  | ||       
AGCCAGCAAAGGAAGAAAGCTTTTGTAGTGATTGGGATCAACACTGCATTCAGTAGCAGGAAGCGTCGGGATTCTGTTCGGCAGACCTGGATGCCTCAAGgt-tcatac-ttttcaatgcaacacatagtactgcaatgagacatggctatttgcatgctttactaacttta-ctggatttcttattcatagttagaagccat

upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatactaat-ttctaacaagttgtggttttggctccctttcttgatcag------
 |||  || ||||||||||  ||||| || |||||  ||||||| || ||||| ||| | ||||| |||||||| ||  ||||||| ||||||||||||||| |  ||| | ||| ||   |||| || | |   ||     | |  | | ||| | || | | |  ||    ||||      | |  |     ||      
AGCCAACCAAGGAAGAAGGCATTTGTTGTAATTGGAGTAAACACCGCATTCAGCAGCCGCAAGCGCCGTGATTCAGTGCGAGAGACATGGATGCCTCAAGgt-tgctatttcttgtattataact-ttatggatgaactagcaagacggttctattattgttagacatttcatttttaatcatcatcatctccaaggctctt

upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133613_T02 (Zea mays), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatacta---atttctaacaagttgtg-gttttggctccctttcttgatcag------------------------------------------------------------------------------------
 |    |  ||||  | |||||| || ||||| ||  | ||||| || ||||| ||||||||||| || ||||| || || ||||| |||||||||||||||   | ||  ||||  |     | |   |  |  |    |||||  |||  |      ||||  |   || |   ||||       ||||||||                                                                                        
AGTAAGCAGAGGAGAAGGGTGTTCGTGGTGATCGGGGTCAACACCGCCTTCAGCAGCAGGAAGCGTCGGGATTCCGTGAGGGAGACCTGGATGCCTCAAGgttcgtgattctttgtctttcccccggactgatgcagaggaaatgatgatgatgcaggattctctctgtttatttatttttatatattttcttgaaagatccaatggcgcaggaaatatccattagggctgactgctatttctcttttgttttactgtgcttgtctgacctgctgtttatcag

upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatactaatttctaacaagttgtggttttggctccctttcttgatcag
|     ||  |  |||| || ||||| ||||| || |||||||| ||||| || ||  | ||||| |||||||| ||| ||||||| ||||||||||||||||  ||  | |   || |           | ||| |  |   ||    |  | ||||||  ||                               
GCTGAGCCTCGACAGAAAGTTTTTGTTGTGATCGGAATAAACACCGCTTTTAGCAGTCGTAAGCGTCGTGATTCCGTTCGAGAGACATGGATGCCTCAAGgtaaattcggctc--aacg----------cattctcaagtgcttgactcttttcatttcttccag------------------------------

upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ23757 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatactaatttctaacaagttgtggttttggctccctttcttgatcag
   | ||  ||  | ||||  || || ||||| ||||||||||| |||||||| ||| ||||||| ||||| || ||| |||| || |||||||| || |||   |   |   |   |     || ||| ||| |  | ||  ||      || || | | ||  |||    ||||                   
AATCATCAGAGACAAAAGGCCTTCGTGGTGATCGGCATAAACACGGCTTTCAGCAGCCGGAAGCGTCGTGACTCTGTTCGAGAAACATGGATGCCACAGGgtgagtcccgcactttttttcttct-tttgagttt--tttatttg------ctcatctatcacttgtttcacttttcag----------------

upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ21395 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCTCCCAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatgttttgaatggaaactgttttagtctaatctaaatggggatactaatttctaacaagttgtggttttggctccctttcttgatcag
   | ||  ||  | ||||  || || ||||| ||||||||||| |||||||| ||| ||||||| ||||| || |||||||| || |||||||| || |||   |   |            ||| ||||  |||  | |   || |  |  || || || |    |       |||  || ||||   |     
AATCATCAGAGACAAAAGGCCTTCGTGGTGATCGGCATAAACACGGCTTTCAGCAGCCGGAAGCGTCGTGACTCTGTTAGAGAAACATGGATGCCACAGGgtgagtcccgc-----------actttttt--tcttcttt---tgagttttttatttgctcatgtatcac----ttgtttcacttttcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208155480|gb|GD955525.1|GD955525
EST:     CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAG                         GTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCAT
genomic: CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatg ... tcttgatcagGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCAT
EST: gi|151401991|gb|EV271804.1|EV271804
EST:     CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAG                         GTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCA
genomic: CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatg ... tcttgatcagGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCA
EST: gi|192296211|gb|FG989047.1|FG989047
EST:     CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAG                         GTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCGGATTCA
genomic: CAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcttatg ... tcttgatcagGTGAACAGCTTCTTCAATTAGAACGCGAGAAAGGAATTGTCATCAGATTCA