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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgctaaatataagaccttcgattgatgttagtctcgcaatgtgttatgcgtgtgagttcaatgtgttttacttttgatgttgtag

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgctaaatataagaccttcgattgatgttagtctcgcaatgtgttatgcgtgtgagttcaatgtgttttact--tttgatgttgtag-----------
||||| ||||| || |||||||||||| | |||   ||| | || ||||| || || || || ||||||||||| |||||||||||||| ||||||||||   |  |   | |      ||   |  |||||  | |  | |||||   || |  | | |  |   ||||  |||  |||  |    |             
GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgtttt---ttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg

upper sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgctaaatataagaccttcgattgatgttagt-ctcgcaatgtgttatgcgtgtgagttcaatgtgttttacttttgatgttgtag----------
||||| |||||| |||| || |||||||||||||   |||| |||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| |   |     |     | | | ||    | | |  | || || | ||  | ||  ||| |     |   | | ||||   |   ||           
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttg-gggttagagattgggataactcaattttagcgaattaacttccactga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284560|gb|AW597148.1|AW597148
EST:     AGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACG                         ACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGG
genomic: AGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgcta ... gatgttgtagACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGG