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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAATATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatagttgtatgataggtcagattccatgttttcagattcactgttttaacaatctaatgttattcaacgtgttcag

Basic information

species Glycine max
transcript GLYMA12G35990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 3
TGGGCAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAATATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgta---attatagttgta-tga--taggtcagattc-catgttttcagattcactgttttaacaatctaatgttattcaacgtgttcag------------
 |||||||| || ||||||||||| || ||||| || || || || |||||||||||||| || ||||| ||  || |||| ||||||||||| || |||||      | || ||||| ||   |  || | |||  ||||  |    |     |    | | ||   |      || ||| | |                
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgctgtaattgtagtggctttagtaatatttacatgactgagcaagttttaacatgataactgagcaagttttaacatatatttattttgttgcag

upper sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 3
TGGGCAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAATATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatagttgtatgataggtcag-attccatgttttcagattcactgttttaacaatctaatgttattcaacgtgttcag
 |||||||| || ||||||||||| || ||||| || || || || |||||||||||||| || ||||| ||  || |||| ||||||||||| || |||||   |   ||  | |  |    ||| | |   |   ||     |||   ||||||||   |  | || |    |        
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgcggtattgtagtgccgcagtaatatttacattactgatcaagtttttaacatgtttttattttgttgcag------

upper sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGGCAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAATATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatagttgtatgataggtcagattccatgttttcagattc--actgttttaacaatctaatgt----tattcaacgtgttcag-----------------------------------------------------
||| || || || || ||||| |||||| | || || |||||||| ||||||||||||||||||  |||||| || |||||  | |||||||| || |||||| || |  || | | |   |||   ||| || | | ||| ||   | |  |||| ||||   | ||    |  |||| |  ||||                                                      
TGGTCAACAAGGATCTTATCCTATCAAACTATTCTACACCTCCAACATGCCCATCATTCTTCAGAGTGCCCTCGTATCCAACTTGTACTTCATTTCACAGgta-ttttttttctgttacttgtc---ttcaatctatacagcttgcaatttctttagcaatgcgaagtatcgttgtcaatggtttcaactcattaacttcttggaattaattaaaattcaaaagacttgtcgtcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666291|gb|AW277750.1|AW277750
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254316196|gb|GR827733.1|GR827733
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|193442814|gb|FK404220.1|FK404220
EST:     TTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: TTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|15287746|gb|BI471637.1|BI471637
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254335629|gb|GR847157.1|GR847157
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|15287699|gb|BI471590.1|BI471590
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|193320327|gb|FK286072.1|FK286072
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254347544|gb|GR853793.1|GR853793
EST:     CCATCA-TC-TCAGTCTG-CCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCA-CGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|193345515|gb|FK313682.1|FK313682
EST:     TCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: TCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|193415995|gb|FK376657.1|FK376657
EST:     TTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: TTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254335630|gb|GR847158.1|GR847158
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|6916447|gb|AW397977.1|AW397977
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|19938617|gb|BQ081805.1|BQ081805
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254345254|gb|GR855804.1|GR855804
EST:     GTTTCCAATCTCTACTTCATCTCCCAG                         CTGCT-CACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: GTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|193702495|gb|FK635161.1|FK635161
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCAACCGTAAAGTAC
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCA-CCGTAA-GTAC
EST: gi|58018067|gb|CX704809.1|CX704809
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254345253|gb|GR855803.1|GR855803
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254347543|gb|GR853792.1|GR853792
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAA-CTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|13562944|gb|BG551164.1|BG551164
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|151407584|gb|EV277399.1|EV277399
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTGGGAAAA
EST: gi|254329727|gb|GR839280.1|GR839280
EST:     CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAG                         CTGCTCCACCGTAAGTACAG
genomic: CCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGgtaattatag ... acgtgttcagCTGCTCCACCGTAAGTACAG