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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtattagtcttatttgtgattaaaaaaaatagtgtatattatcatagtacactggacatatggaatgatatgcaaattaaatatggtacag

Basic information

species Glycine max
transcript GLYMA12G35840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 6
CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtattagtcttatttgtgattaaaaaaaatagtgtatattatcatagtacactggacatatggaatgata--tgcaaattaaatatgg--tacag
 | || || || ||  | || || || || || || ||||| || || ||||||||||| |||||||||||||||||||||||||| || || || ||||||||  ||   || | | ||        ||  ||| |   | ||||||  | |     | || ||| ||   |  ||  |  || |||  |||||
AGGGTTGATACTGCCCTTAAGAACATTGGCATAAACGAGCGAGTGCCCTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGAGACCGTGATGgtat--gttacatctatcat--------atcatgtttgcaa-catagttaattaat--tgtgaaattatggttttaatattgatgtggactacag

upper sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g14670.1 (Oryza sativa), 5'ss of exon 4
CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgt---------attagtcttatttgtgattaaaaaaaatag----tgtatattatcatagtacactgga--catatggaatgatatgca-aattaaatatggtacag-----------------------------------------------
||||| || || || ||||| || ||||| ||  | |||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||| ||||||         ||   | || ||  || ||   |  | ||     | || || || | || ||| || |  |   |   ||| | |    || | | ||      ||                                               
CGTGTGGATACTGCATTGAAGAACATCGGTATCGACGAGCGTGTTCCTTACAATGCTCCTCTTATTCAGTTCTCGTCTTGGATGGGAGGAGATCGTGATGgtgagaaacatatctattttgttgttggttcttagcactatgccttataaataattacagcacaatgaatcctctttagatgttgtctttaaattactaccacttaggagataccatgtctgtatgcactctaaatttcaaatgacctttacag

upper sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 4
CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtatt---agtcttatttgtgattaaaaaaaatagtgtatattatcatagtacactggaca-tatggaatgatatgcaaattaaatatggtacag
||| | ||||| || ||||| || ||||| ||| | |||||||||||||||||||| || || ||||| || |||||||||||||| || || || ||||||||    ||  |   || ||| |     |  ||||  |     |  | || || |  | | | | |     |   | |||| |           
CGTCTGGACACTGCCTTGAAGAACATCGGAATTGATGAGCGTGTTCCTTATAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaaggatggcttttgacttctgta--tagttca----gttcttgtgcatttaataattttgtgcattgcaccaatttag----------

upper sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G473001_T02 (Zea mays), 5'ss of exon 3
CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtattagtcttatttgtgattaaaaaaaatagtgtatattatcatagtacactggacatatggaatgatatgcaa-----attaaatatggtacag--------------------------------------------------------------------------------------
|| || || || || ||||| || || |||||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||||||    | |  || | |   ||       | || | | | ||   | || | |  | ||   | ||     |||      ||||  | || | |                                                                                        
CGGGTTGATACTGCATTGAAGAACATTGGGATTAACGAGCGTGTTCCTTACAATGCACCTCTTATTCAATTCTCTTCTTGGATGGGGGGAGATCGTGATGgtgagtgacacatctctacatatttgtctt-gtct-tctcatggcattatattaaatatgcagtatttgcagcacctattattatctttgtttctagtggttaggaagatgattattcattgtgcctgtgtctgcggtttgcacctctgtcctattctaaagcaatgtctctacaaatgcag

upper sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
CGTGTAGACACAGCTTTGAACAATATCGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGgtattagtcttatttgtgattaaaaaaa-atagtgtatattatcatagtacactggacatatggaatgatatgcaaattaaatatggta-cag-------
||||| |||||||||||||| || || || || || || ||||||||||| ||||| || || ||||| || |||||||||||||| |||||||| |||||||| |||||| ||    |  ||| | | ||      |||| || |     |   |   |      | || |   |||  |  |   || ||        
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatgagtcttcttcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaattagcaaaacattg