Sequence
atgc intronic sequence ATGC exonic sequenceTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttacttctgtttacttgcttctatatgttcagtgtttgaaaattgaaattgatgtttgtcagaaatcatcctttagtgaaacttcccctgcttat...
Basic information
species | Glycine max |
transcript | GLYMA12G35510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g32400.2 (Oryza sativa), 5'ss of exon 4
TCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtagg--ttacttctgtttacttgcttctatatgttcag-tgtttgaaaattgaaattgatgtttgtcagaaatcatcctttagtgaaac-ttcccctgcttat--------------------------------------
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CCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGGCTGGTGGTTCTGTCGCTGACCTAgtatgtgtttattttttatattttatttgacacggcaaaatcttatattatctacatacaagttaataaatcatttcagtttcaagaatcattcaattggttcaaaatttgaagttggtatgatttctgttttcatctgtag
upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G027756_T01 (Zea mays), 5'ss of exon 4
TCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttacttctgtttacttgct-tctatatgttcagtgtttgaaaattgaaattgatgtttgtcaga--aatcatcctttagtgaaacttcccctgcttat--------------------------------------------------------------------
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CCGGTGCCCATATATTACCGATTATTACGGCTCTTATCTTCACCAGACTAAATTGTGGATAGTAATGGAATACATGGCTGGTGGTTCTGTTGCTGATCTTgtatgttttgtatatcctttctcaattgatccttataatgtttaata--caatgcagataactgtgaagttagtgctccattgaccattccatcatcacctgtcaaacaccattataaactacttgatgataattgatgttgttcgttcatttccatcattccatgtgcag
upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 5
TCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttacttctgtttacttgct---tctatatgttcagt-gtttgaaaattgaaattgatgtttgtcagaaatcatcctttagtgaaacttcccc-tgcttat--------------------------------
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CCGTTGCCCATATATTACCGAATACTATGGTTCTTACCTTCACCAGACCAAGTTATGGATCATCATGGAATATATGGCTGGTGGCTCAGTTGCTGACCTTgtatgttatttc-acttctttgctgagttgagatataaaattgtttgtgtagtgatgcacacatctctgtggagttattatcctttaattctcgttggtgcaaataataatctgttaaaactatattgcgagtgtag
upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 5
TCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttacttctgtttacttgcttctatatgttcagtgtttgaaaattgaaattgatgtttgtcagaaatcatcctttagtgaaacttcccctgcttat
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TCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGGCTGGCGGTTCTGTTGCTGACCTAgtgggttacttttcttgactttcttctacatattaaatgcatgaacctcataaccatttcatttcatggatcagtattaaggaggaataaaacatttctcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9899540|gb|BE608508.1|BE608508EST: AACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTA ATCCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGT
genomic: AACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttact ... gcttctgtagATCCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAgtaggttacttctgtttacttgcttctatatgttcagtgtttgaaaattgaaattgatgtttgtcagaaatcatcctttagtgaaacttcccctgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcccc