1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAAGGAATCAAGGGGCATGGCTATTATGATGAACTTGTTGTCCCCATAATTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttcttctaatgattctgcatttggattaaatagctgttgggaactctggatgatttttatctactttttcccccaaagaaatcgtgggtgatgtagcgtagtttattattcgttttcccccaatttgtag
species | Glycine max |
transcript | GLYMA12G35390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAACACGGCCTACGAGTATCAGCTCACAGAATCTGTTGCTAAAGCT ATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGCEST: gi|209709958|gb|BW657304.1|BW657304
genomic: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttct ... caatttgtagATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGC
EST: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCT ATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGNCA-CCATGGGGTEST: gi|9986611|gb|BE660719.1|BE660719
genomic: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttct ... caatttgtagATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCG-CAACCATGGGGT
EST: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCT ATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGCAACCATGGGGTAEST: gi|254313702|gb|GR831331.1|GR831331
genomic: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttct ... caatttgtagATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGCAACCATGGGGTA
EST: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCT ATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGCAACCATGGGGTA
genomic: TTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttct ... caatttgtagATTGAAGACTACCCAAAAGCAACAGCAGTGCTTGTTCGCAACCATGGGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGGAATCAAGGGGCATGGCTATTATGATGAACTTGTTGTCCCCATAATTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTgtatgtttcttctaatgattctgcatttggattaaatagctgttgggaactctggatgatttttatctactttttcccccaaagaaatcgtgggtgatgtagcgtagtttattattcgttttcccccaatttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA