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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGTGGGATACGTGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagttgtccacttgatttgctgagattagttttttgatatacaatgaactataataaggttagaacctaagacttcatgccactagctaagtctctac...

Basic information

species Glycine max
transcript GLYMA12G34960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 4
TAGGTGGGATACGTGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaa-gttgtccacttgatttgctgagattagttttttgatatacaatgaactataata----------aggttagaacctaagacttcatgccactagctaagtctctac
 || ||||| |  ||||||||||| |  |||||||| || |||||||| |||||||| |||||||| || ||||||||||| || | ||| || || ||||||| | |     |||  | | ||  | ||  || | |    |  ||    |||||| |          ||  || |   | |||     ||    ||  ||| | | || 
GAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttcttgcttcttcttctttgtttttttctgtaggcttaaaaatgctataagagcatctacttagactaaagattgagatggattgtttttatgtaa-tgtgtag

upper sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
TAGGTGGGATACGTGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagttgtccacttgatttgctgagattagttttttgatatacaatgaac-tataat--aaggttagaacctaagactt-catgccactagctaagtctctac------------------------------------------
|||||||||||| ||||| || || || ||||||||  ||||||||||||||||||||||||| ||||| ||||| ||  |||| | ||| ||||| ||||||||   ||| |   || | |     ||  |||||| ||  | | | | | | | ||  |  | |  |  || |    | | ||| |      ||  |  |||                                          
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagc-atcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaacattaccactaagtgagattataatgaaagagggattcttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310987|gb|FK000378.1|FK000378
EST:     CTTGGATATGGACTACAGGGAACCACGAACTTGACTATGCTCCTGAAATT                         GATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTAC
genomic: CTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagttgtc ... tacttttcagGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTAC